Locus 478

Sequence ID 2L_DroMel_CAF1
Location 1,393,510 – 1,393,618
Length 108
Max. P 0.686467
window765

overview

Window 5

Location 1,393,510 – 1,393,618
Length 108
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 90.71
Mean single sequence MFE -24.70
Consensus MFE -20.60
Energy contribution -20.60
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.91
Structure conservation index 0.83
SVM decision value 0.32
SVM RNA-class probability 0.686467
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1393510 108 - 22407834
G--------CCCU---AGCUGGGCAAACACAACUGUAACUUUUAAUUCCGUUAAUUGCCAAUCUCUGUUGGCAGCAAUCAACAAUUUUGCUUGCACAACACUCGACUGUUGCAAUGUUG
(--------(((.---....)))).....((((((((((................(((((((....)))))))((((.(((.....))).)))).............))))))..)))) ( -28.70)
>DroVir_CAF1 28746 106 - 1
A--------CACUG-----UGUGUAAACACAACUGUAACUUUUAAUUCCGUUAAUUGCCAAUCUCUGUUGGCAGCAAUCAACAAUUUUGCUUGCACAACACUCGACUGUUGCAAUGUUG
.--------...((-----(((....)))))..((((((................(((((((....)))))))((((.(((.....))).)))).............))))))...... ( -23.40)
>DroGri_CAF1 15682 108 - 1
-----------CAGUCAACUGGGUAAACACAACUGUAACUUUUAAUUCCGUUAAUUGCCAAUCUCUGUUGGCAGCAAUCAACAAUUUUGCUUGCACAACACUCGACUGUUGCAAUGUUG
-----------(((....)))........((((((((((................(((((((....)))))))((((.(((.....))).)))).............))))))..)))) ( -22.40)
>DroWil_CAF1 12305 116 - 1
GCCUAGGUCACCC---AACUGGGCAAACACAACUGUAACUUUUAAUUCCGUUAAUUGCCAAUCUCUGUUGGCAGCAAUCAACAAUUUUGCUUGCACAACACUCGACUGUUGCAAUGUUG
((((((.......---..)))))).....((((((((((................(((((((....)))))))((((.(((.....))).)))).............))))))..)))) ( -30.20)
>DroMoj_CAF1 17868 103 - 1
-----------CCG-----UGUGUAAACACAACUGUAACUUUUAAUUCCGUUAAUUGCCAAUCUCUGUUGGCAGCAAUCAACAAUUUUGCUUGCACAACACUCGACUGUUGCAAUGUUG
-----------..(-----(((....))))...((((((................(((((((....)))))))((((.(((.....))).)))).............))))))...... ( -22.90)
>DroPer_CAF1 12697 102 - 1
-----------------ACUGGGCAAACACAACUGUAACUUUUAAUUCCGUUAAUUGCCAAUCUCUGUUGGCAGCAAUCAACAAUUUUGCUUGCACAACACUCGACUGUUGCAAUGUUG
-----------------............((((((((((................(((((((....)))))))((((.(((.....))).)))).............))))))..)))) ( -20.60)
>consensus
___________CC____ACUGGGCAAACACAACUGUAACUUUUAAUUCCGUUAAUUGCCAAUCUCUGUUGGCAGCAAUCAACAAUUUUGCUUGCACAACACUCGACUGUUGCAAUGUUG
.............................((((((((((................(((((((....)))))))((((.(((.....))).)))).............))))))..)))) (-20.60 = -20.60 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:06 2006