| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,649,984 – 13,650,080 |
| Length | 96 |
| Max. P | 0.663033 |
| Location | 13,649,984 – 13,650,080 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 79.90 |
| Mean single sequence MFE | -27.96 |
| Consensus MFE | -20.60 |
| Energy contribution | -21.16 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.663033 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13649984 96 + 22407834 CCGUGCCACGAUUUCGCGUUUGUUGUGCAGCUGCUGGGUGAAAAUGUUGCACAGCAUGCAUAAAUAAUAAACGGCAAGCC--AGCGAACACACACACA------------ ..(((.......((((((((((((((...(((((((.(..(.....)..).))))).))....)))))))))((....))--.)))))......))).------------ ( -29.82) >DroGri_CAF1 24231 89 + 1 CCGUGCAACGAUUUCGCGUUUGUUGUGCAGCUGCUGGGCGUAAAUGUUGCACAGCAUGCAUAAAUAAUAAACAACAAGCUUCUGCUGCC--------------------- ..(..((((((........))))))..).(((((((.(((.......))).))))).)).................(((....)))...--------------------- ( -25.60) >DroSim_CAF1 15235 92 + 1 CCGUGCCACGAUUUCGCGUUUGUUGUGCAGCUGCUGGGUGAAAAUGUUGCACAGCAUGCAUAAAUAAUAAACGGCAAGCC--AGCGAACACACA---------------- ..(((.......((((((((((((((...(((((((.(..(.....)..).))))).))....)))))))))((....))--.))))))))...---------------- ( -28.71) >DroWil_CAF1 80806 100 + 1 GCGUGCAAUGAUUUCGCGUUUGUUGUGCAGCGGUUGGGUGAAAAUGUUGCACAGCAUGCAUAAAUAAUAAACGGCAAGCU--GGCUGACA--------CUCACACACAUG ..(((...(((....(((..((((((((((((.((......)).)))))))))))))))............((((.....--.))))...--------.)))..)))... ( -27.70) >consensus CCGUGCAACGAUUUCGCGUUUGUUGUGCAGCUGCUGGGUGAAAAUGUUGCACAGCAUGCAUAAAUAAUAAACGGCAAGCC__AGCGAACA____________________ ...((((.((....)).((.(((((((((((..............))))))))))).)).............)))).((....))......................... (-20.60 = -21.16 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:03 2006