Locus 4776

Sequence ID 2L_DroMel_CAF1
Location 13,644,901 – 13,645,004
Length 103
Max. P 0.658535
window7558

overview

Window 8

Location 13,644,901 – 13,645,004
Length 103
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 77.07
Mean single sequence MFE -18.43
Consensus MFE -11.51
Energy contribution -11.28
Covariance contribution -0.22
Combinations/Pair 1.08
Mean z-score -1.42
Structure conservation index 0.62
SVM decision value 0.26
SVM RNA-class probability 0.658535
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13644901 103 + 22407834
CUUCCAUAACAACCAUUUCCCCCCCAGCGCCGUGCCGUUUGAUUUACUUCAAACAAUUGGCAACAUCAUACAUCAACGCGCUU-UUGUUUUUGUUCUGAGCCUU
..........................((((((....((((((......))))))...))))....(((.(((..((((.....-.))))..)))..)))))... ( -17.10)
>DroPse_CAF1 11893 84 + 1
------UGGGGGC---------UAAGGCUCAGUGCCGUUUGAUUUACUUCAAACAAUUGGCAACAUCAUACAUCAACGCGUUUUUUGUUCUUGUUUUGG-----
------..(..((---------((((((.....)))((((((......))))))..)))))..)..((.(((..((((.......))))..)))..)).----- ( -20.10)
>DroEre_CAF1 10137 99 + 1
CUUCCAUAACAACCAUUUUC--CCCAGCUCCGUGCCGUUUGAUUUACUUCAAACAAUUGGCAACAUCAUACAUCAACGCGCUU-UUGUUUUUGCUCCUGGC--U
....................--.((((....((((.((((((......))))))...((....))............))))..-..((....))..)))).--. ( -16.40)
>DroYak_CAF1 10351 101 + 1
CGUCCAUAACAACCAUUUCC--CCCAGCUCCGUGCCGUUUGAUUUACUUCAAACAAUUGGCAACAUCAUACAUCAACGCGCUU-UUGUUUUUGCUCUGGGCCCU
....................--(((((....((((.((((((......))))))...((....))............))))..-..((....)).))))).... ( -19.50)
>DroAna_CAF1 10288 93 + 1
AGUCCAUA-UAUCCAU--CCA-ACCAGAGCGGUGCCGUUUGAUUUACUUCAAACAAUUGGCAACAUCAUACAUCAACGCGCCU-UUGUUUUUGUUUUG------
........-.......--..(-((.((((((((((.((((((......))))))...((....))............))))).-..))))).)))...------ ( -18.70)
>DroPer_CAF1 12266 84 + 1
------UGGGAGC---------UAAGGCUCAGUGCCGUUUGAUUUACUUCAAACAAUUGGCAACAUCAUACAUCAACGCGUUUUUUGUUCUUGUUUUGG-----
------..(..((---------((((((.....)))((((((......))))))..)))))..)..((.(((..((((.......))))..)))..)).----- ( -18.80)
>consensus
C_UCCAUAACAACCAU__CC__CCCAGCUCCGUGCCGUUUGAUUUACUUCAAACAAUUGGCAACAUCAUACAUCAACGCGCUU_UUGUUUUUGUUCUGG_____
...............................((((.((((((......))))))...((....))............))))....................... (-11.51 = -11.28 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:02 2006