Locus 4775

Sequence ID 2L_DroMel_CAF1
Location 13,642,969 – 13,643,068
Length 99
Max. P 0.973900
window7557

overview

Window 7

Location 13,642,969 – 13,643,068
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 85.56
Mean single sequence MFE -30.96
Consensus MFE -24.46
Energy contribution -26.26
Covariance contribution 1.80
Combinations/Pair 1.13
Mean z-score -2.42
Structure conservation index 0.79
SVM decision value 1.72
SVM RNA-class probability 0.973900
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13642969 99 + 22407834
UUGUAAUAAGCUUGCAGGCGCAAAAGUGGAAAGUGGGGACGUUGCAUUAUAAAACAAUCGCCAUGUCCUGGCAUUACCCAUUUAAAUCGCGUUUGCAAU
...........((((((((((..((((((...((.(((((((.(((((.......))).)).))))))).)).....)))))).....)))))))))). ( -31.40)
>DroSec_CAF1 8433 99 + 1
UUGUUAUAAGUUUGCAGGCGCAAAAGUGGAAAGUGGGGACGUUGCAUUAUAAAAAAAUCGCCAUGUCCUGGCAUUACCCACUUAAGUCGCGUUUGCAAU
...........((((((((((..((((((...((.(((((((.(((((.......))).)).))))))).)).....)))))).....)))))))))). ( -34.00)
>DroSim_CAF1 8006 99 + 1
UUGUUAUAAGUUUGCAGGCGCAAAAGUGGAAAGUGGGGACGUUGCAUUAUAAAAAAAUCGCCAUGUCCUGGCAUUACCCACUUAAGUCGCGUUUGCAAU
...........((((((((((..((((((...((.(((((((.(((((.......))).)).))))))).)).....)))))).....)))))))))). ( -34.00)
>DroEre_CAF1 8302 99 + 1
CUUUUAUUAGAUUGCAGGGGCAAAUCUGGAAAGUGGGGACGCUGCAUUAUGAAAGGAUCGCCAUGUCCUGGCGUCACUCAUUCAAAUCGCGUUUGCAAU
..........((((((((.((..........((((....))))......((((((((.(((((.....))))))).))..))))....)).)))))))) ( -29.20)
>DroYak_CAF1 8492 95 + 1
CU-AAGUUAGAUUGCAGG---AAAGCUGGAAAGGUGGGACGCUGCAUUUUGAAAGGAUCUCCAUGUCCUGGCGUCACCCAUUUAAGUCGCGUUUGCAAU
..-.......((((((((---...((.((..((((((((((((..........(((((......))))))))))..)))))))...)))).)))))))) ( -26.20)
>consensus
UUGUUAUAAGAUUGCAGGCGCAAAAGUGGAAAGUGGGGACGUUGCAUUAUAAAAAAAUCGCCAUGUCCUGGCAUUACCCAUUUAAGUCGCGUUUGCAAU
...........((((((((((..((((((...((.(((((((.(((((.......))).)).))))))).)).....)))))).....)))))))))). (-24.46 = -26.26 +   1.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:01 2006