| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,640,424 – 13,640,525 |
| Length | 101 |
| Max. P | 0.805276 |
| Location | 13,640,424 – 13,640,525 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 79.25 |
| Mean single sequence MFE | -23.68 |
| Consensus MFE | -18.04 |
| Energy contribution | -18.40 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.805276 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13640424 101 + 22407834 UGAUUACGCUGAUCUUGUUGUGGGACAGGGUCAAGCGCGUGAUGUUGGACAUGUUGACUGCAA------AAAAAAUUAUA-UUA-AUAAGAAUACUAAACUCUUUAAAA--- ..(((((((((((((((((....))))))))))...)))))))((..(.....)..)).....------...........-...-........................--- ( -19.70) >DroSec_CAF1 5883 108 + 1 UGAUCACGCUGAUCUUGUUGUGGGACAGGGUCAGGCGCGUGAUGUUGGACAUGUUGACUGCAAAUAUAAAAGAAAUUAUA-UUAAAUAGGAAUACUAAACACUUUAAAA--- ..(((((((((((((((((....))))))))))...))))))).(((((..((((.......(((((((......)))))-))...(((.....))))))).)))))..--- ( -25.30) >DroSim_CAF1 5456 108 + 1 UGAUCACGCUGAUCUUGUUGUGGGACAGGGUCAGGCGCGUGAUGUUGGACAUGUUGACUGCAAAUAUAAAAGAAAUUAUA-UUAAAUAGGAAUACUAAACACUUUAAAA--- ..(((((((((((((((((....))))))))))...))))))).(((((..((((.......(((((((......)))))-))...(((.....))))))).)))))..--- ( -25.30) >DroEre_CAF1 5904 98 + 1 UGAUCACGCUGAUCUUGUUGUGGGACAGGGUCAGGCGCGUGAUGUUGGACAUGGUGACUGCAAGUUAAAAA----AGGUA-UUAAAUAAGAAU-UUAAGCUUAU-------- ..(((((((((((((((((....))))))))))...)))))))....(.((.(....))))..........----((((.-((((((....))-))))))))..-------- ( -24.90) >DroYak_CAF1 5946 108 + 1 UGAUCACGCUGAUCUUGUUGAGCGACAGGGUCAGGCGCGUGAUGUUGGACAUGUUGACUGCAAAUUAAAAAU---AUGUA-UUUAAUAAGAUUACUAAGCAUUUUCACAAAU ..(((((((((((((((((....))))))))))...)))))))..((((.(((((.....(..((((((...---.....-))))))..).......))))).))))..... ( -27.10) >DroAna_CAF1 5776 99 + 1 UGAUCACACUGAUCUUGUUAUGUGACAGUGUGAGGCGAGUGAUGUUGGACAUGUUGACUAUAAAAUAAAAU----UUUUAGUUAGAUAAUAAG-CUAAAUAUAU-------- ...((((((((.((.........))))))))))(((.....(((.....))).(((((((.(((......)----)).))))))).......)-))........-------- ( -19.80) >consensus UGAUCACGCUGAUCUUGUUGUGGGACAGGGUCAGGCGCGUGAUGUUGGACAUGUUGACUGCAAAUUAAAAA____UUAUA_UUAAAUAAGAAUACUAAACACUUUAAAA___ ..(((((((((((((((((....))))))))))...)))))))..................................................................... (-18.04 = -18.40 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:00 2006