Locus 4771

Sequence ID 2L_DroMel_CAF1
Location 13,632,062 – 13,632,174
Length 112
Max. P 0.754259
window7552

overview

Window 2

Location 13,632,062 – 13,632,174
Length 112
Sequences 3
Columns 117
Reading direction forward
Mean pairwise identity 76.59
Mean single sequence MFE -34.67
Consensus MFE -22.15
Energy contribution -24.27
Covariance contribution 2.11
Combinations/Pair 1.04
Mean z-score -1.66
Structure conservation index 0.64
SVM decision value 0.48
SVM RNA-class probability 0.754259
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13632062 112 + 22407834
UUUUGGGGCAUCUGCAGAGCGAUUGGGGCUUAGCAAUC-AUCCAAUCAGCUGACCUCCUUCAGCGCGUACA----GCGUAUGCAAUCAACCGUUAUGGCCCGCAACGGUGCUCCACC
...(((((((((.((...))(.((((((((((((....-.........(((((......)))))((((((.----..))))))........)))).))))).))))))))))))).. ( -40.20)
>DroSim_CAF1 12316 117 + 1
NNNNNNNNNNNNNNNNNNCCGAUUGGGGCUUAGCCAUCUAUCCAAUCAGCUGACCUCCUUCAGCUGCUGCAAUAUGGGUAUGCAAUCAAUCAUUAUGGCCCGCAACCGUGCCUCAAA
....................((((((.((.((.((((.....((..(((((((......))))))).))....)))).)).))..)))))).....(((.((....)).)))..... ( -28.00)
>DroYak_CAF1 523 112 + 1
UUUUGGGGCAUCUGCGGAGCGCAUGGGGCUUAGCAAUC-AUCCAAUCAGCUGACCUCCUUCAGCGCGUACA----GCGUAUGCAAUCAACCGUUAUGGCCCGCAACCGUGAUCCACC
..(((((((....((((.((....((((.(((((....-.........))))).))))....))((((((.----..))))))......))))....)))).)))............ ( -35.82)
>consensus
UUUUGGGGCAUCUGC_GAGCGAUUGGGGCUUAGCAAUC_AUCCAAUCAGCUGACCUCCUUCAGCGCGUACA____GCGUAUGCAAUCAACCGUUAUGGCCCGCAACCGUGCUCCACC
..................(((.((((((((((((..............(((((......)))))((((((.......))))))........)))).))))).))).)))........ (-22.15 = -24.27 +   2.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:56 2006