| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,585,668 – 13,585,780 |
| Length | 112 |
| Max. P | 0.969795 |
| Location | 13,585,668 – 13,585,780 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 83.23 |
| Mean single sequence MFE | -24.07 |
| Consensus MFE | -18.85 |
| Energy contribution | -20.97 |
| Covariance contribution | 2.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.74 |
| Structure conservation index | 0.78 |
| SVM decision value | 1.65 |
| SVM RNA-class probability | 0.969795 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13585668 112 - 22407834 CAUAUACAUAUAUAUGUAUGUCUGUAUGUAUAAACCAGAAACUGGGUUAUGCGCAAACUGAGAAAUCCACUCUGAAUAUUUGCCAUUCCCAAAUUUGGUAACAAUUCUUUGC ..((((((((((.((....)).)))))))))).((((((...((((..(((.(((((.(.(((.......))).)...)))))))).))))..))))))............. ( -26.60) >DroSec_CAF1 18758 110 - 1 CAUAUACAUAUAUACAUAU--AUGUAUGUAUAAACCAGAAACUGGGUUAUGCGCAAACUGAGAAAUCCACUCCGAAUAAUUGCCAUUCUCAAAUUUGGUAACAAUUUGUUGC ...(((((((((....)))--))))))((((((.((((...)))).))))))((((...((....)).....(((((..((((((..........))))))..))))))))) ( -26.60) >DroEre_CAF1 18977 92 - 1 CAUAU--------------------AUGUAUAAACCAGAAACUGGGUUAUGCGCAAACUGAGAAAUCCACUCCGAAUACUCGCCAUUCUCAAAUUUGGUAACAAUUCGUUGC .....--------------------..((((((.((((...)))).))))))((((...((....)).....(((((....((((..........))))....))))))))) ( -19.00) >consensus CAUAUACAUAUAUA__UAU___UGUAUGUAUAAACCAGAAACUGGGUUAUGCGCAAACUGAGAAAUCCACUCCGAAUAAUUGCCAUUCUCAAAUUUGGUAACAAUUCGUUGC ...((((((((((....))))))))))((((((.((((...)))).))))))((((...((....)).....(((((..((((((..........))))))..))))))))) (-18.85 = -20.97 + 2.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:55 2006