Locus 477

Sequence ID 2L_DroMel_CAF1
Location 1,391,436 – 1,391,526
Length 90
Max. P 0.510334
window764

overview

Window 4

Location 1,391,436 – 1,391,526
Length 90
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 80.21
Mean single sequence MFE -30.75
Consensus MFE -22.31
Energy contribution -22.26
Covariance contribution -0.05
Combinations/Pair 1.25
Mean z-score -1.07
Structure conservation index 0.73
SVM decision value -0.05
SVM RNA-class probability 0.510334
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1391436 90 - 22407834
UCCCUCUUC--C-AUCCCCAGCGCUACUUCAAUAGUGGUCUGGAUCUGAGCGAGGCUCGUGCCAGUCUGCUGUCCGGAGAUGUUGUGGAGCUG
.........--.-.(((.(((((...((((.((((..(.((((...(((((...)))))..)))).)..))))..)))).))))).))).... ( -30.20)
>DroVir_CAF1 26275 86 - 1
UCCCUUCU---G-AA---CAGCGUUAUUUCAAUAGCGGCCUGGAUCUGAGCGAGGCACGCGCCAGCCUAUUGUCCGGCGAUGUUGUGGAGCUG
...((((.---.-.(---(((((((.........(((((((.(.......).)))).)))....(((........)))))))))))))))... ( -26.10)
>DroGri_CAF1 13032 89 - 1
UCUCUUUUCUCA-AA---CAGCGCUACUUCAAUAGUGGCUUGGAUUUGAGUGAGGCACGCGCCAGUCUGCUGUCUGGCGAUGUUGUGGAGCUA
.(((....((((-(.---(((.((((((.....)))))))))...))))).)))(((((((((((.(....).)))))).)).)))....... ( -30.30)
>DroEre_CAF1 10057 91 - 1
UUCCAUUUC--CCCUGGGCAGCGCUACUUCAAUAGUGGCCUGGAUCUGAGCGAGGCUCGUGCCAGUCUGCUGUCCGGAGAUGUUGUGGAGCUG
((((((.((--..(((((((((((((((.....))))))((((...(((((...)))))..))))...))))))))).))....))))))... ( -39.90)
>DroYak_CAF1 9874 90 - 1
UCCCUCUUC--C-CUUUCCAGCGCUACUUCAAUAGUGGUCUGGAUCUGAGCGAGGCUCGUGCCAGUCUGCUGUCCGGCGAUGUUGUGGAGCUG
...((((((--.-...(((((.((((((.....)))))))))))...))).)))((((.(((..(((.(((....))))))...))))))).. ( -28.60)
>DroAna_CAF1 9810 84 - 1
AAUGUAU---------UGCAGCGGUACUUCAACAGUGGCUUGGAUCUGAGCGAAGCUCGAGCCAGUCUCCUGUCCGGAGAUGUGGUCGAGCUG
...((((---------((...))))))..........((((......))))..(((((((.(((((((((.....)))))).)))))))))). ( -29.40)
>consensus
UCCCUUUUC__C_AU___CAGCGCUACUUCAAUAGUGGCCUGGAUCUGAGCGAGGCUCGUGCCAGUCUGCUGUCCGGAGAUGUUGUGGAGCUG
..................((((.((((..((((((..(.((((...(((((...)))))..)))).)..)))).......))..)))).)))) (-22.31 = -22.26 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:05 2006