Locus 4769

Sequence ID 2L_DroMel_CAF1
Location 13,583,915 – 13,584,032
Length 117
Max. P 0.500000
window7550

overview

Window 0

Location 13,583,915 – 13,584,032
Length 117
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 78.36
Mean single sequence MFE -28.58
Consensus MFE -18.99
Energy contribution -19.67
Covariance contribution 0.69
Combinations/Pair 1.09
Mean z-score -1.56
Structure conservation index 0.66
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13583915 117 + 22407834
UAUGGCAGACUCUCAGUUAAUGGGAGUUU---UCUCAACCUCUUCGAAAUGUUUUUCCUGGCCAACCAGACGAACUCGGCCUACACCAGGCUCCAGGCUUCUGGCUCCAGACUUCCAGAU
..(((.(((((((((.....)))))))..---.............((((....))))((((....(((((.(.....(((((.....))))).....).)))))..)))).)).)))... ( -30.50)
>DroSec_CAF1 17039 113 + 1
UAUGGCAGACUCUCAGUUAAUGGGAGUUUCCUUCCCAACCUCUUCGAAAUGUUUUUCCUGGCCAACCAGGCGAACUCGGCCUACACCAGGCUC-------CUGGCUCCAGACUUCCAGAU
...((.(((((((((.....)))))))))))..............((((....))))((((....(((((((....))((((.....)))).)-------))))..)))).......... ( -31.40)
>DroEre_CAF1 17289 115 + 1
UAUCACAGACUCUC-GUUAAUAGGAGUUU---UCCCAACCUCUUCGAAGUGCUUUUCCUGGCCAAACAGGCGAGCCUGGCCUACACCAGGCUCCAGACUCCAAAUUCCAGA-UUCCAGAC
.......((.(((.-(......(((((..---.............((((....))))((((((.....)))((((((((......)))))))))))))))).....).)))-.))..... ( -31.00)
>DroYak_CAF1 14136 94 + 1
UAUGGCAGACUCUCAGUUAAUAGGAGUUU---UCCCAACCUCUUUGAAAUGUUUUUCCUGGC-AACCAGGCAAACCCGGCCUACACCAGGCUCCAGA----------------------C
..(((.((((((..(.....)..))))))---..))).....((((....((((..(((((.-..))))).))))..(((((.....))))).))))----------------------. ( -21.40)
>consensus
UAUGGCAGACUCUCAGUUAAUAGGAGUUU___UCCCAACCUCUUCGAAAUGUUUUUCCUGGCCAACCAGGCGAACCCGGCCUACACCAGGCUCCAGA___CUGGCUCCAGA_UUCCAGAC
......(((((((((.....))))))))).....................((((..(((((....))))).))))..(((((.....)))))............................ (-18.99 = -19.67 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:54 2006