Locus 4767

Sequence ID 2L_DroMel_CAF1
Location 13,583,180 – 13,583,270
Length 90
Max. P 0.690612
window7547

overview

Window 7

Location 13,583,180 – 13,583,270
Length 90
Sequences 3
Columns 90
Reading direction forward
Mean pairwise identity 83.33
Mean single sequence MFE -22.07
Consensus MFE -16.77
Energy contribution -16.33
Covariance contribution -0.44
Combinations/Pair 1.22
Mean z-score -1.84
Structure conservation index 0.76
SVM decision value 0.33
SVM RNA-class probability 0.690612
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13583180 90 + 22407834
UUAUCCCUUUUAAGACUUGCGAUAUUUCUCGCAACUCACUUUUUGGUUCGUCACAAGAUGCUGAAAUGAUUACGGCAUUGAUGAUGAAGC
.............((.((((((......)))))).)).......(.(((((((...(((((((.........)))))))..))))))).) ( -23.80)
>DroEre_CAF1 16512 90 + 1
UUAUCCUUUUUAAGACCUGAGAUGUUUUUUGCAACUCACUUUUGUGUUCGUCACAAGAUUGUGAAAUGAUUACACCAUUGAUGAUGAAGA
............(((..((((.(((.....))).))))..)))...((((((((((...(((((.....)))))...))).))))))).. ( -17.00)
>DroYak_CAF1 13383 90 + 1
UUAUCCUUUCUGAAAGCGGCGAUAUUUUUUGCAACUCACUUCAAGGUUCGUCAGAAGAUGCUGAAAUGAUUACGGCAUUGAUGACGAAGA
....((((...(..((..((((......))))..))..)...))))(((((((...(((((((.........)))))))..))))))).. ( -25.40)
>consensus
UUAUCCUUUUUAAGACCUGCGAUAUUUUUUGCAACUCACUUUUAGGUUCGUCACAAGAUGCUGAAAUGAUUACGGCAUUGAUGAUGAAGA
..................((((......))))..............(((((((...(((((((.........)))))))..))))))).. (-16.77 = -16.33 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:51 2006