Locus 4763

Sequence ID 2L_DroMel_CAF1
Location 13,578,606 – 13,578,722
Length 116
Max. P 0.515123
window7538

overview

Window 8

Location 13,578,606 – 13,578,722
Length 116
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 83.38
Mean single sequence MFE -31.28
Consensus MFE -18.76
Energy contribution -21.32
Covariance contribution 2.56
Combinations/Pair 1.04
Mean z-score -1.84
Structure conservation index 0.60
SVM decision value -0.04
SVM RNA-class probability 0.515123
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13578606 116 + 22407834
UCCCUUGGGUCCUUCAGCGAGUGCAUGUGCUUUAGAUAUGUACAUAUGGAGCAGUUGGGGAACCUUUGCCACUUCGGCAUGGAGGAGAGUAUCCUCCAUUUUCCCGCCUGACCUUC
......((((((((((....((((((((.......))))))))...))))).((.(((((((....((((.....))))(((((((.....))))))).))))))).))))))).. ( -42.80)
>DroSec_CAF1 11755 109 + 1
UCCCUUGGGUCCUUCAGCGAGUGCAUGUGCUUUAGAUAUGUACAUAUGCAGCAGUUGGGGAACCUUUGCCACUUCGGCAU-------ACUCUCCUCCAUUUUCCCGCCUGACCUUC
......(((((.....(((..((((((((.............)))))))).....((((((.....((((.....)))).-------....))).)))......)))..))))).. ( -29.12)
>DroEre_CAF1 12128 96 + 1
UCCCUGGGGUCCUUCAGCAAGUGCAUGUGCUUUAGAUA--------UGCAGCAGUUGA-GAACCUUUGCCUCUUCGGCAU-------CCUCU----CAUUUUCCUGCCUGACCUUC
.....((((((..........(((((((.......)))--------))))((((.(((-((.....((((.....)))).-------..)))----)).....))))..)))))). ( -27.10)
>DroYak_CAF1 8893 96 + 1
UCCCUGGGGUCCUUCAGCGAGUGCAUGUGCUUUAGAUA--------UGCAGCUGUUGG-GAACCUUUGCCUCUUCGGCAU-------CCUCU----CAUUUUCCUGCCUGACCUUU
.....((((((...(((.((((((((((.......)))--------)))).....(((-((.....((((.....)))).-------..)))----))..))))))...)))))). ( -26.10)
>consensus
UCCCUGGGGUCCUUCAGCGAGUGCAUGUGCUUUAGAUA________UGCAGCAGUUGG_GAACCUUUGCCACUUCGGCAU_______ACUCU____CAUUUUCCCGCCUGACCUUC
......((((((((((((...((((((((.............))))))))...)))))))......((((.....))))..............................))))).. (-18.76 = -21.32 +   2.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:42 2006