| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,574,486 – 13,574,603 |
| Length | 117 |
| Max. P | 0.547044 |
| Location | 13,574,486 – 13,574,603 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.02 |
| Mean single sequence MFE | -33.92 |
| Consensus MFE | -27.80 |
| Energy contribution | -28.24 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.547044 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13574486 117 - 22407834 UCC--CCAUGUCCU-GCCACCUCAUCCGACCAGCGCUUUACCUUUAAUUACCGGGUUGAUGCAACAUUCGGUUUAACGGUCAAUGCUGUCCAAGUCACGUAACUUGGGAAAUUGGAUGUG ...--.........-.......(((((((.(((((.((.(((.((((..((((.((((...))))...)))))))).))).)))))))(((((((......)))))))...))))))).. ( -31.60) >DroSec_CAF1 7716 118 - 1 UCC--CCAUGUACUGGCCACCUCAUCCGACCAGCGCUUUACCUUUAAUUACCGGGUUGAUGCAACAUUCGGGUUAACGGUCAAUGCUGUCCAAGUCACGUAACUUGGGAAAUUGGAUGUG ...--(((.....)))......(((((((.(((((.((.(((.(((((..(((.((((...))))...)))))))).))).)))))))(((((((......)))))))...))))))).. ( -32.10) >DroSim_CAF1 7292 120 - 1 UCCACCCAUGUCCUGGCCACCUCAUCCGACCAGCGCUUUACCUUUAAUUACCGGGUUGAUGCAACAUUCGGUUUAACGGUCAAUGCUGUCCAAGUCACGUAACUUGGGAAAUUGGAUGUG .....(((.....)))......(((((((.(((((.((.(((.((((..((((.((((...))))...)))))))).))).)))))))(((((((......)))))))...))))))).. ( -32.40) >DroEre_CAF1 8176 117 - 1 UCC--CCAUGUCCU-GCCCCCUUAUCGGACCAGCGCUUUACCGUUAAUUACCGAGUUGAUGCAACAUUCGGUUUAACGGUCAAUGCUGUCCAAGUCACGUAACUUGGGAAAUUGGAUGUG ...--.(((((((.-...(((.....((((.((((.((.((((((((..(((((((((...))))..))))))))))))).))))))))))((((......))))))).....))))))) ( -39.90) >DroYak_CAF1 4860 117 - 1 UCC--CCAUGUCCU-GCCACCUCUUUAGACCAGCGCUUUACCGUUAAUUACCGGGUUGAUGCAACAUUCGGUUUAACGGUCAAUGCUGUCCAAGUCACGUAACUUGCGAAAUUGGAUGUG ...--.(((((((.-...............(((((.((.((((((((..((((.((((...))))...)))))))))))).)))))))(((((((......))))).))....))))))) ( -33.60) >consensus UCC__CCAUGUCCU_GCCACCUCAUCCGACCAGCGCUUUACCUUUAAUUACCGGGUUGAUGCAACAUUCGGUUUAACGGUCAAUGCUGUCCAAGUCACGUAACUUGGGAAAUUGGAUGUG ......(((((((.................(((((.((.(((.((((..(((((((((...))))..))))))))).))).)))))))(((((((......))))))).....))))))) (-27.80 = -28.24 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:31 2006