Locus 4751

Sequence ID 2L_DroMel_CAF1
Location 13,571,682 – 13,571,800
Length 118
Max. P 0.529993
window7515

overview

Window 5

Location 13,571,682 – 13,571,800
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.32
Mean single sequence MFE -35.42
Consensus MFE -30.02
Energy contribution -30.38
Covariance contribution 0.36
Combinations/Pair 1.12
Mean z-score -1.26
Structure conservation index 0.85
SVM decision value -0.01
SVM RNA-class probability 0.529993
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13571682 118 + 22407834
GUUG--UGUUUCAGCAGGGGUCUUGCAUGCAAGGCACAACAAAAUGGCAUUUGAAACAUGUGUCAAGUUCCAUGCACUUGUUUAUGUUUGUCGGCCAAAUUUCCCGGCCCAAGGCCCCGC
((((--.....)))).((((((((((((((((((((........(((.((((((........)))))).)))))).)))))..)))......((((.........))))))))))))).. ( -39.50)
>DroSec_CAF1 4989 117 + 1
-UUG--UGUUUCAGCAGGGGUCUUGCAUGCAAGGCACAACAAAAUGGCAUUUGAAACAUGUGUCAAGUUCCAUGCACUUGUUUAUGUUUGUCGGCCAAAUUUCCCGGCCCAAGGCCCCGC
-.((--(......)))((((((((((((((((((((........(((.((((((........)))))).)))))).)))))..)))......((((.........))))))))))))).. ( -37.20)
>DroSim_CAF1 4547 117 + 1
-UUG--UGUUUCAGCAGGGGUCUUGCAUGCAAGGAACAACAAAAUGGCAUUUGAAACAUGUGUCAAGUUCCAUGCACUUGUUUAUGUUUGUCGGCCAAAUUUCCCGGCCCAAGGCCCCGC
-.((--(......)))(((((((((((.(((..((((((....((((.((((((........)))))).))))....)))))).))).))..((((.........))))))))))))).. ( -38.70)
>DroEre_CAF1 5439 115 + 1
-UUG--UG-UUCAGCAUGGGUC-UGCAUGCGAGGUGCAACAAAAUGGCAUUUGAAACAUGUGUCAAGUUCCAUGCACUUGUUUAUGCUUGUCGGCCAAAUUUCCCGCCCCAAGGCCCCAC
-..(--((-.....)))(((((-((((((..(((((((......(((.((((((........)))))).))))))))))...))))).....(((..........)))...))))))... ( -30.70)
>DroYak_CAF1 2115 117 + 1
-UUGUGUG-UUCAGCAGGGGUC-UGCAUGCAAGGCACAACAAAAUGGCAUUUGAAACAUGUGUCAAGUUCCAUGCACUUGUUUAUGUUUGUCGGCCGAAUUUCCCGCUCCAAGGCCCCAC
-...(((.-....)))((((((-(....((..(......)....((((.....(((((((...(((((.......)))))..)))))))....))))........))....))))))).. ( -31.00)
>consensus
_UUG__UGUUUCAGCAGGGGUCUUGCAUGCAAGGCACAACAAAAUGGCAUUUGAAACAUGUGUCAAGUUCCAUGCACUUGUUUAUGUUUGUCGGCCAAAUUUCCCGGCCCAAGGCCCCGC
................(((((((((((.(((..(.((((....((((.((((((........)))))).))))....)))))..))).))..((((.........))))))))))))).. (-30.02 = -30.38 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:18 2006