| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,384,642 – 1,384,734 |
| Length | 92 |
| Max. P | 0.790081 |
| Location | 1,384,642 – 1,384,734 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 69.78 |
| Mean single sequence MFE | -18.50 |
| Consensus MFE | -10.86 |
| Energy contribution | -10.87 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.790081 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1384642 92 + 22407834 AGAUUGGAUCAGUCUGCGCUGAUUACUAAUUUACUGUAUGCAUUACAAAAUUGAGUUAUUUGUGUGCUUUUCCCAAAUUAUCAAAG-AGUACU (((((((((((((....))))))..)))))))..((((.....))))................((((((((............)))-))))). ( -15.40) >DroSec_CAF1 3140 71 + 1 AGGUUGGAUCAGUAUGCGCUGAUUACUAAUUUGCUAGAUGUAUUGCCAAAUUUAGUAAUUUGGCA----------------------ACGACU .((((((((((((....)))))))..................((((((((((....)))))))))----------------------)))))) ( -21.90) >DroSim_CAF1 3177 93 + 1 AGGUUGGAUCAGUCUGCGCUGAUUACUAAUUUACUGAAUGUAGUACCAAAUUUAGUUAUUUGGGUGCUGUUACCAAAUUAUCAAAUUAUCAAU .(((..(((((((....)))))))................(((((((((((......)))).)))))))..)))................... ( -18.20) >consensus AGGUUGGAUCAGUCUGCGCUGAUUACUAAUUUACUGAAUGUAUUACCAAAUUUAGUUAUUUGGGUGCU_UU_CCAAAUUAUCAAA__ACCACU (((((((((((((....))))))..)))))))(((((((..........)))))))..................................... (-10.86 = -10.87 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:02 2006