Locus 4746

Sequence ID 2L_DroMel_CAF1
Location 13,567,808 – 13,567,927
Length 119
Max. P 0.506757
window7508

overview

Window 8

Location 13,567,808 – 13,567,927
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 90.30
Mean single sequence MFE -38.75
Consensus MFE -26.42
Energy contribution -26.43
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.95
Structure conservation index 0.68
SVM decision value -0.05
SVM RNA-class probability 0.506757
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13567808 119 + 22407834
GGGCCAGCAAACGUUUUUAUGCUUGGUAAUUAGGAUGUUUGCUGUGCCAAGAGGGGAGGAGGGGGUGGUCCACAUGACC-CACCCACGAAUAACUCAGUUAUCAGACACGAGCUGGCUAA
.(((((((....((......))(((((((((..(.((((((((.(.((......)).).)).((((((..(....)..)-))))).)))))).)..)))))))))......))))))).. ( -40.10)
>DroSec_CAF1 1227 113 + 1
GGGCCAGCAAACGUUUUUAUGCUCGGUAAUUAGGAUGUUGGCAGUGCCAA-AGG-----GCGGGUUGGACCACAUGACC-CACCCACGAAUAACUCAGUUAUCAGACACGAGCUGGCUAA
.(((((((....((......))..(((((((..(...(((((...)))))-.((-----(.((((((.......)))))-).)))........)..)))))))........))))))).. ( -38.70)
>DroSim_CAF1 732 115 + 1
GGGCCAGCAAACGUUUUUAUGCUCGGUAAUUAGGAUGUUGUCAGUGCCAAAAGG-----GCGGGUUGGACCACAUGACCCCACCCACGAAUAACUCAGUUAUCAGACACGAGCUGGCUAA
.(((((((....((......))..((((((...((.(((((..(((((.....)-----))((((.((..(....)..)).))))))..))))))).))))))........))))))).. ( -36.10)
>DroEre_CAF1 1589 108 + 1
GGGCCAGCAAACGUUUUUAUGCUGGGUAAUUAGGAUGUUGGCCGUGCCAA-----------GGGGUGGACAACAUGACC-CACCCACGAAUAACUCAGUUAUCAGACACGAGCUGGCUAA
.(((((((....((((....(((((((.(((.(....(((((...)))))-----------.((((((..........)-))))).).))).)))))))....))))....))))))).. ( -40.10)
>consensus
GGGCCAGCAAACGUUUUUAUGCUCGGUAAUUAGGAUGUUGGCAGUGCCAA_AGG_____GCGGGGUGGACCACAUGACC_CACCCACGAAUAACUCAGUUAUCAGACACGAGCUGGCUAA
.(((((((.((((((((.((........)).))))))))....(((.(.............(((..((.........))...)))..((.((((...)))))).).)))..))))))).. (-26.42 = -26.43 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:10 2006