| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,566,258 – 13,566,362 |
| Length | 104 |
| Max. P | 0.841402 |
| Location | 13,566,258 – 13,566,362 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 81.44 |
| Mean single sequence MFE | -21.03 |
| Consensus MFE | -19.90 |
| Energy contribution | -19.90 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.54 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.841402 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13566258 104 - 22407834 UAUGGCAAGUGCACAAUACCCGGCAACAGAAAGUUUUCAAGCACAAUGUUUGCAGCUCUUUAGUUCGUUGAGGAUUGCAAUCCGCUUCUU-----------UUUUUUUUGUUUAU ...(((..((((.........(....).(((....)))..)))).....((((((.(((((((....)))))))))))))...)))....-----------.............. ( -20.60) >DroSec_CAF1 22655 115 - 1 UAUGGCAAGUGCACAAUAGCCGGCAACAGAAAGUUUUCAAGCACAAUGUUUGCAGCUCUUUAGUUCGUUGAGGAUUGCAAUCCGCUUGUUUUUUUUUCUUUUUUUUUUUGUUUAU ...(((............)))(....)((((((....(((((.......((((((.(((((((....)))))))))))))...))))).....))))))................ ( -22.60) >DroYak_CAF1 20532 89 - 1 AAUUGCAAGUGCACAAUACCCGGCAACAGAAAGUUUUCAAGCACAAUGUUUGCAGCUCUUUAGUUCGUUGAGGAUUGCAAUCCGCUUCA-------------------------- ....((..((((.........(....).(((....)))..)))).....((((((.(((((((....)))))))))))))...))....-------------------------- ( -19.90) >consensus UAUGGCAAGUGCACAAUACCCGGCAACAGAAAGUUUUCAAGCACAAUGUUUGCAGCUCUUUAGUUCGUUGAGGAUUGCAAUCCGCUUCUU___________UUUUUUUUGUUUAU ....((..((((.........(....).(((....)))..)))).....((((((.(((((((....)))))))))))))...)).............................. (-19.90 = -19.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:05 2006