| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,565,511 – 13,565,631 |
| Length | 120 |
| Max. P | 0.972961 |
| Location | 13,565,511 – 13,565,631 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.11 |
| Mean single sequence MFE | -36.92 |
| Consensus MFE | -35.66 |
| Energy contribution | -35.54 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.97 |
| SVM decision value | 1.70 |
| SVM RNA-class probability | 0.972961 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13565511 120 - 22407834 UUGAAUAUUGUGUCGAUUGCGUGGGCGUAACCGGGGGGGAAAUGCUAUUAACUGGUCAUACCCCACGGAAUAGCAAUGUUUUUUUUCCGCUUUUUUUUAUGACCCCUCGCUUCAAGGCAC .........(((((....(((.((((((((.(((..(((((((((((((...(((.......)))...)))))))...))))))..))).......))))).)))..))).....))))) ( -35.20) >DroSec_CAF1 21945 117 - 1 UUGAAUAUUGUGUCGAUUGCGUGGGCGUAACCGGGGGGGAAAUGCUAUUAACUGGUCAUAUCCCACGGAAUAGCAACGUUUU-UUUCCGCUUU--UUUAUGACCCCUCGCUUCAAGGCAC .........(((((....(((.((((((((.(((..(((((.(((((((...(((.......)))...)))))))...))))-)..)))....--.))))).)))..))).....))))) ( -36.80) >DroSim_CAF1 29508 118 - 1 UUGAAUAUUGUGUCGAUUGCGUGGGCGUAACCGGGGGGGAAAUGCUAUUAACUGGUCAUACCCCACGGAAUAGCAACGUUUUUUUUCCGCUUU--UUUAUGACCCCUCGCUUCAAGGCAC .........(((((....(((.((((((((.(((..(((((((((((((...(((.......)))...)))))))...))))))..)))....--.))))).)))..))).....))))) ( -36.50) >DroEre_CAF1 21329 117 - 1 UGGAAUAUUGUGUCGAUUGCGUGGGCGUAACCGGGGGGGAAAUGCUAUUAACUGGUCAUACCCCACGGAAUAGCGCAGUUUU-UUUCCGCCUU--UUCAUGACCCCUCGCUCCAAGGCAC .((((.(((((((..(((.((((((.((((((((...((.....)).....)))))..))))))))).))).)))))))...-.))))(((((--....(((....)))....))))).. ( -39.30) >DroYak_CAF1 19821 117 - 1 UUGAAUAUUGUGUCGAUUGCGUGGGCGUAACCGGGGGGGAAAUGCUAUUAACUGGUCAUACCCCACGGAAUAGCACUGUUUU-UUUCCGCUUU--UUUAUGACCCUUCGCUCCAAGGCAC .........(((((....(((.((((((((.(((..(((((.(((((((...(((.......)))...)))))))...))))-)..)))....--.))))).)))..))).....))))) ( -36.80) >consensus UUGAAUAUUGUGUCGAUUGCGUGGGCGUAACCGGGGGGGAAAUGCUAUUAACUGGUCAUACCCCACGGAAUAGCAACGUUUU_UUUCCGCUUU__UUUAUGACCCCUCGCUUCAAGGCAC .........(((((....(((.((((((((..((((.((((((((((((...(((.......)))...)))))))........))))).))))...))))).)))..))).....))))) (-35.66 = -35.54 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:04 2006