Locus 4742

Sequence ID 2L_DroMel_CAF1
Location 13,559,889 – 13,560,004
Length 115
Max. P 0.791066
window7501

overview

Window 1

Location 13,559,889 – 13,560,004
Length 115
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 81.54
Mean single sequence MFE -38.46
Consensus MFE -21.50
Energy contribution -22.74
Covariance contribution 1.24
Combinations/Pair 1.26
Mean z-score -2.22
Structure conservation index 0.56
SVM decision value 0.59
SVM RNA-class probability 0.791066
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13559889 115 + 22407834
UUUUUACUUGGCCCGAUCCCGAGGGAGCAGUGCGGUCGCGCCAGUUGGCAAAAGCUGCAGA--UGCUGCCGCGCGCCCAC--ACACCUUUUUCCGAGCCCCGGAAAACUCCUUCUUUUU
....................(((((((..(((.((.((((((....)))....((.((((.--..)))).))))).)).)--))....(((((((.....))))))))))))))..... ( -42.00)
>DroSec_CAF1 21089 114 + 1
UUUUUACUUGGCCCGAGCC-AAGGGAGCAGUGUGGUCG--CCGGUUGGCAAAAGCUGCAGA--UGCUACCACGCGCCCACACACACCUUUUUCCGAGCCCCGGAAAACUCCUUCUUUUU
......((((((....)))-)))((((..((((((.((--(.(((.((((...........--)))))))..))).))))))......(((((((.....)))))))))))........ ( -42.20)
>DroSim_CAF1 28653 114 + 1
UUUUUACUUGGCCCGAGCC-CAGGGAGCAGUGUGGUCG--CCGGUUGGCAAAAGCUGCAGA--UGCUACCACGCGCCCACACACACCUUUUUCCGAGCCCCGGAAAACUCCUUCUUUUU
......((.(((....)))-.))((((..((((((.((--(.(((.((((...........--)))))))..))).))))))......(((((((.....)))))))))))........ ( -38.10)
>DroEre_CAF1 20458 110 + 1
UUUUUACUUGGCCCUCGCC-AAGGGAGCAGUGUGGUCG--CCGGUUUCCAAAUGCUGCAGA--UGCUGCCGAGUGCCU---CACACCUUUUUCCGAACCACGGAAAACUCCUUCUUU-U
......((((((....)))-)))((((..(((.((.((--(((((........((......--.)).)))).))))).---)))....(((((((.....)))))))))))......-. ( -36.50)
>DroYak_CAF1 18853 108 + 1
UUUUUACUUGGCCAACGCC-AAGGGAGC---GUGGUCG--CCAGUUG-CGAAUGCUGCAGACCUCUUUCCGAAUCCCG---AAUCCCGAACUCUGGACCCCGGAAAACUCCUUCUUU-U
......((((((....)))-)))((((.---(.((((.--.((((..-.....))))..)))).)((((((..(((.(---(.........)).)))...)))))).))))......-. ( -33.50)
>consensus
UUUUUACUUGGCCCGAGCC_AAGGGAGCAGUGUGGUCG__CCGGUUGGCAAAAGCUGCAGA__UGCUACCGCGCGCCCAC_CACACCUUUUUCCGAGCCCCGGAAAACUCCUUCUUUUU
......((((((....))).)))((((..(((((((......((((......))))(((....))).)))))))..............(((((((.....)))))))))))........ (-21.50 = -22.74 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:03 2006