Locus 4739

Sequence ID 2L_DroMel_CAF1
Location 13,558,323 – 13,558,421
Length 98
Max. P 0.862175
window7493

overview

Window 3

Location 13,558,323 – 13,558,421
Length 98
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 88.49
Mean single sequence MFE -27.60
Consensus MFE -21.61
Energy contribution -22.30
Covariance contribution 0.69
Combinations/Pair 1.21
Mean z-score -2.01
Structure conservation index 0.78
SVM decision value 0.83
SVM RNA-class probability 0.862175
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13558323 98 + 22407834
UUGUGCUGCAAGCUUACCCUCUUUUAAUAAAAGAAA-AAAAUACCUGAAUGAGUGGAGUCCCCUUGCCGCUUGUCGGGUUUUGUGUGCUGCUCGCAUAU
.(((((.(((.((.(((..(((((.....)))))..-..((.(((((.(..(((((..........)))))..)))))).))))).)))))..))))). ( -27.50)
>DroSec_CAF1 19499 99 + 1
UUGUGCUGCAAGUUUACCCCUUUUUAAUAAAAGAAAAAAAAUACCUGAAUGAGUGGAGUCUCCUUUCCGCUUGUCGGGUUUUGUGUGCUGCUCGCAUAU
.(((((.(((.((.(((..(((((....)))))......((.(((((.(..(((((((......)))))))..)))))).))))).)))))..))))). ( -29.90)
>DroSim_CAF1 27163 98 + 1
UUGUGCUGCAAGUUUACCCCUUUUUAAUAAAAGAAA-AAAAUACCUGAAUGAGUGGAGUCUCCUUUCCGCUUGUCGGGUUUUGUGUGCUGCUCGCAUAU
.(((((.(((.((.(((..(((((....)))))...-..((.(((((.(..(((((((......)))))))..)))))).))))).)))))..))))). ( -29.90)
>DroYak_CAF1 17439 96 + 1
UUGUACUGCAAGU-UACCCCCUUUUAAUAAAAGAAA-GAAGGACCUGAAUGGG-GGAGAUUCCUUGCCGCUUGUCAGGUUUUGUGUAUUGCUCAAAGAC
(((....((((..-(((...(((((.......))))-).(((((((((..(((-.(((....))).)).)...))))))))))))..)))).))).... ( -23.10)
>consensus
UUGUGCUGCAAGUUUACCCCCUUUUAAUAAAAGAAA_AAAAUACCUGAAUGAGUGGAGUCUCCUUGCCGCUUGUCGGGUUUUGUGUGCUGCUCGCAUAU
.(((((.(((.((.(((..(((((....)))))......((.(((((.(..(((((((......)))))))..)))))).))))).)))))..))))). (-21.61 = -22.30 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:55 2006