Locus 4737

Sequence ID 2L_DroMel_CAF1
Location 13,557,730 – 13,557,849
Length 119
Max. P 0.711994
window7490

overview

Window 0

Location 13,557,730 – 13,557,849
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 83.25
Mean single sequence MFE -24.98
Consensus MFE -10.56
Energy contribution -14.12
Covariance contribution 3.56
Combinations/Pair 1.16
Mean z-score -2.84
Structure conservation index 0.42
SVM decision value 0.38
SVM RNA-class probability 0.711994
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13557730 119 + 22407834
AACAAUACCACAUUUUACGGUGAAUAUAAAAUGUUGACAGUCAAAUGAAAAUAAUUGUUGCAAA-AAACAUUUCCGUGUAUAUUUAUUUGUGCACGAAAAUUCAUUUACCUGUCGAACAA
.....((((.........)))).........(((((((((..(((((((......((((.....-.))))....((((((((......))))))))....)))))))..))))).)))). ( -29.70)
>DroSec_CAF1 18982 118 + 1
AACAAUACCACAUUUUACCGUGGAUAUAUAAUGUUGACAGCCAAAUUAAAAUAAUUGUUACAAA-A-ACAUUUCCGUGUAUAUUUAAUUGUGCAUGAAAAUGUGUUUACCUGUCGAACAA
.......((((........))))........(((((((((...(((((...))))).....(((-.-((((((.((((((((......)))))))).)))))).)))..))))).)))). ( -25.80)
>DroSim_CAF1 26637 119 + 1
AACAAUACCACAUUUUACGGUGGAUAUAAAAUGUUGACAGCCAAAUGAAAAUAAUUGUUACAAA-ACGCAUUUCCGUGUAUAUUUAUUUGUGCAUGAAAAUGCAUUUACCUGUCGAACAA
.......((((........))))........(((((((((..((((..........(((....)-))((((((.((((((((......)))))))).))))))))))..))))).)))). ( -30.30)
>DroEre_CAF1 18982 120 + 1
AACAAUAACACAUUUUACGGGUGAUAUAAAACUUUGACAGUCAAGUGAAAAUAAUUGUUACAAAAAAACAUUUCCGCGAAAACGUAUUUGUGCAAGAAAGUGCAUUUACCUGUCGAACAA
............(((.((((((((......(((((((((((...((....)).))))))...........(((.((((((......)))))).))))))))....)))))))).)))... ( -19.30)
>DroYak_CAF1 17113 105 + 1
AACAAAACCACAUUUUACGGUGGAUAUAAAACAUUGCCAGCCAAAUGAAAAUAAUUGUUACAAA-AAACGUAUCCGCGAAAAUUUACUUGUGCAUGAAAGUGCAUU--------------
...................((((((((....((((........)))).........(((.....-.)))))))))))............((((((....)))))).-------------- ( -19.80)
>consensus
AACAAUACCACAUUUUACGGUGGAUAUAAAAUGUUGACAGCCAAAUGAAAAUAAUUGUUACAAA_AAACAUUUCCGUGUAUAUUUAUUUGUGCAUGAAAAUGCAUUUACCUGUCGAACAA
.......((((........))))..........(((((((..(((((.......(((...))).....(((((.((((((((......)))))))).))))))))))..))))))).... (-10.56 = -14.12 +   3.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:53 2006