| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,557,342 – 13,557,461 |
| Length | 119 |
| Max. P | 0.992121 |
| Location | 13,557,342 – 13,557,461 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 89.62 |
| Mean single sequence MFE | -15.43 |
| Consensus MFE | -14.68 |
| Energy contribution | -14.80 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.95 |
| SVM decision value | 2.31 |
| SVM RNA-class probability | 0.992121 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13557342 119 + 22407834 AAUCGAAUGCAAUUUAUUACCAAAAUACAACCCUUUGGAAGUAACUUGCUUAUGCUGCACCACCAAAAAAACACCCUUAAAAUAAACCCCAAAAAUUGACAGUACAUAAAAAGCUGCCA ........((((.(((((.(((((.........))))).))))).))))...............................................((.((((.........)))).)) ( -12.50) >DroSec_CAF1 18597 118 + 1 AAUUGAAUGCAAUUUAUUACUAAAAUCCAACCCUUUAGAAGUAAUUUGCUUUUGCUGCACCACCAAA-AAACACCCCUAAAAUUAACCCCAAAAAUUGACAGUACAUAAAAUGCUGUCA ..(((...((((.(((((.(((((.........))))).))))).))))(((((.((...)).))))-)....................)))....((((((((.......)))))))) ( -18.00) >DroSim_CAF1 26255 118 + 1 AAUUGAAUGCAAUUUAUUACUAAAAUCCAACCCUUUGGAAGUAACUUGCUUAUGCUGCACCACCAAA-AAACACCCUUAAAAUUAACCCCAAAAAUUGACAGUACAUAAAAUGCUGUCA .......((((.....(((((....(((((....))))))))))...((....))))))........-............................((((((((.......)))))))) ( -18.50) >DroEre_CAF1 18375 113 + 1 AAUCGAAUGCAAUUUAUUACUAAAAUGCAACCCUUUAGAAACAACUUGC---U---GCACCACCAAAAAACCACCCCUAAAAUUAACCCCAUAAACUGACAGUACAAAAAAUGCUGUCA ....(...((((.((.((.(((((.........))))).)).)).))))---.---.).......................................(((((((.......))))))). ( -12.70) >consensus AAUCGAAUGCAAUUUAUUACUAAAAUCCAACCCUUUAGAAGUAACUUGCUUAUGCUGCACCACCAAA_AAACACCCCUAAAAUUAACCCCAAAAAUUGACAGUACAUAAAAUGCUGUCA ........((((.(((((.(((((.........))))).))))).))))...............................................((((((((.......)))))))) (-14.68 = -14.80 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:52 2006