Locus 4735

Sequence ID 2L_DroMel_CAF1
Location 13,556,994 – 13,557,104
Length 110
Max. P 0.534062
window7488

overview

Window 8

Location 13,556,994 – 13,557,104
Length 110
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 78.41
Mean single sequence MFE -19.84
Consensus MFE -12.28
Energy contribution -13.56
Covariance contribution 1.28
Combinations/Pair 1.05
Mean z-score -1.62
Structure conservation index 0.62
SVM decision value 0.00
SVM RNA-class probability 0.534062
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13556994 110 - 22407834
AUCACCCAUGGCAACCUACAU--------ACAUAAAUACAAAUGAAUGGUAUAUAAAUCAAAUUUAAGUGAACUGAA-GCAUUGCUGGUAUAUGUACAUCUAACAUUGCCCAUUCAUUU
.........(((((....(((--------.(((........))).)))(((((((.(((.......((....))..(-((...)))))).)))))))........)))))......... ( -17.20)
>DroSec_CAF1 18270 118 - 1
AUCACCCAUGUCAACCUACAUAUGUACAUACAUAAAUACAAAUGAAUGGUAUAUAAAUCACAUUUAAGUGAACUGAA-GCAUUGCUGGUAUAUGUACAUCUAACAUUGCCCAUUCAUUG
....................(((((....)))))......(((((((((........((((......))))......-(((.((.(((...........))).)).)))))))))))). ( -20.60)
>DroSim_CAF1 25932 114 - 1
AUCACCCAUGGCAACCUACAUAUGUACCUACA----UACAAAUGAAUGGUAUAUAAAUCACAUUUAAGUGAACUGAA-GCAUUGCUGGUGUAUGUGCAUCUAACAUUGCCCAUUCAUUG
..((((...(((((.((.((((((((((..((----(....)))...))))))))..((((......))))..)).)-)..))))))))).(((.(((........))).)))...... ( -24.40)
>DroEre_CAF1 18094 91 - 1
AUCACCCAUGGCAACCC------------------------AUGUAUGGUACAUAAAUCACAUUUAAAUGAAUUGAAGGCAUUUCUGGUACCCA----UCUAGCAUUGCCCAUUCACUG
((((..(((((....))------------------------)))..))))..................(((((....((((...((((......----.))))...)))).)))))... ( -18.70)
>DroYak_CAF1 16409 102 - 1
AUCAACCAUGGCAACCUACAU--------A--------CAUAUUUAUGGCAUAUAAAUCACAUUUAAGUGAACUGAA-GCAUUGCUGGUACCUAUGUAUCUAACAUUGCCCAUUGAUUG
(((((....(((((..((.((--------(--------((((....(((((......((((......))))......-....))))).....))))))).))...)))))..))))).. ( -18.29)
>consensus
AUCACCCAUGGCAACCUACAU________ACA____UACAAAUGAAUGGUAUAUAAAUCACAUUUAAGUGAACUGAA_GCAUUGCUGGUAUAUGUACAUCUAACAUUGCCCAUUCAUUG
........................................(((((((((........((((......)))).......(((.((.(((...........))).)).)))))))))))). (-12.28 = -13.56 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:51 2006