| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,553,176 – 13,553,282 |
| Length | 106 |
| Max. P | 0.830352 |
| Location | 13,553,176 – 13,553,282 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.70 |
| Mean single sequence MFE | -22.48 |
| Consensus MFE | -9.08 |
| Energy contribution | -11.09 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.40 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.830352 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13553176 106 + 22407834 ------AAACCAAAAAUGCUGUGAAAAGCAACAGUUCUGAGAUACAGUAACAAGAUACAGCUGGGAAUUAAGAUAAAGAUACUGUAUCCGUAUCUUAGUUUCAGCUUGAGAU-------- ------..........((((......))))...((((((.....))).))).......((((((.((((((((((..((((...))))..))))))))))))))))......-------- ( -26.00) >DroPse_CAF1 38435 113 + 1 GAGGAGAAAAAAACAGUGCUCUUUAGAGCAACAGUUUUGAGAUACAGAUACAU-UUAGAGAUAUGAAUGAAGAUAAAGCUAGAGAUUUAG------GGCUACAAGUAAAGAUAAAGAUAC .........(((((..(((((....)))))...)))))....(((.....(((-(((......)))))).......((((..........------))))....)))............. ( -16.90) >DroSec_CAF1 12094 94 + 1 ------AUACAAGAAGUGCUGUGAAAAGCAACAGUUCUGAGAUACAGUAACAAGAUACAGCUGGGAAUUAAGAUAAAGA------------GUUUCAGUUUCAACUUGAGAU-------- ------...((((.((.(((((........))))).))(((((.((((...........))))((((((.........)------------))))).)))))..))))....-------- ( -17.20) >DroSim_CAF1 12343 100 + 1 ------AUACAAGAAGUGCUGUGAAAAGCAACAGUUUUGAGAUACAGUAACAAGAUACAGCUGGGAAUUAAGAUAAAUAUACUGU------AUCUCAGUUUCAACUUGAGAU-------- ------...((((....(((((........))))).(((((((((((((...........((........)).......))))))------)))))))......))))....-------- ( -23.57) >DroEre_CAF1 14323 104 + 1 --------ACAAGAAGUGCUGUGAAGAGCAACAGUUCUUAAAUGCAGAAACAAGAUACAGCUGGGAAUUAAGAUAAAGAUACUGUAUUCGUAUCUCAGUUUCAGCUUGAGAU-------- --------.((((....((((((((((((....))))))...((......))...))))))..((((((.(((((..((((...))))..))))).))))))..))))....-------- ( -23.80) >DroYak_CAF1 12497 106 + 1 ------AUACAAGAAGUUGUGUGAAGAGCAACAGUUCUGAGAUAGAGAAACAAGAUACAGCUGGGAAUUAAGAUAAAGAUACUGUAUUUGUAUCUCAGUUUCAGCUUGAGAU-------- ------...((((..(((((.......)))))....(((((((.((((.(((.(((((((.....................)))))))))).)))).)))))))))))....-------- ( -27.40) >consensus ______AUACAAGAAGUGCUGUGAAAAGCAACAGUUCUGAGAUACAGAAACAAGAUACAGCUGGGAAUUAAGAUAAAGAUACUGUAUU_G_AUCUCAGUUUCAACUUGAGAU________ ................(((((((.(((((....)))))....))))))).((((....((((((((..........................))))))))....))))............ ( -9.08 = -11.09 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:47 2006