| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,552,390 – 13,552,501 |
| Length | 111 |
| Max. P | 0.883950 |
| Location | 13,552,390 – 13,552,501 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.12 |
| Mean single sequence MFE | -28.08 |
| Consensus MFE | -18.03 |
| Energy contribution | -20.07 |
| Covariance contribution | 2.03 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.883950 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13552390 111 + 22407834 GCAA---GUCCAUUGUUGGGGCAAAAAGAGCGAAGAAGGCGAAAAGCAUAAGGUAUAACGUGAGUCAUGAAAACCUGAGUAAA------GCUCAGGGGACUCAUCCAUUUUUAUUGUGAA ....---((((.......)))).......((((.((((((.....))....((......(((((((.......((((((....------.)))))).)))))))))..)))).))))... ( -27.50) >DroPse_CAF1 16649 96 + 1 GCAAAAAACUCUUUGUUAAA--------CUCUCAGA---------ACUC-AAGCGAGAAGUGAGUCAUGGAAAUGUCGGGGAA------ACCGAAUGGAAUCAUCCAUUUUUAUGGUGGA (((((......)))))....--------..((((..---------.(((-....)))...))))((((((((((.((((....------.))))..(((....))))))))))))).... ( -20.20) >DroSec_CAF1 11276 111 + 1 GCAA---AUUCAUUGUUGGGGCAAAAAGAGCGAAGAAGGUGGAAAGCAUAAGGUAAACCGUGAGUCAUGAAAACCUGAGUAAA------GCUCAGGGGACUCAUCCAUUUUUAUUGUGAA ((.(---((.....)))...)).......((((.(((((((((........((....)).((((((.......((((((....------.)))))).))))))))))))))).))))... ( -32.40) >DroSim_CAF1 11525 111 + 1 GCAA---AUCCAUUGUUGGGGCAAAAAGAGCGAAGAAGGUGGAAAGCAUAAGGUAUAACGUGAGUCAUGAAAACCUGAGUAAA------GCUCAGGGGACUCAUCCAUUUUUAUUGUGAA ((..---.((((....)))))).......((((.(((((((((........(......).((((((.......((((((....------.)))))).))))))))))))))).))))... ( -32.20) >DroEre_CAF1 13538 111 + 1 GCAA---AUCCAUUGUUGGGGCAGAAAGAGCGAAGAAGGUGGGAAGCAUAAGGUAUGAAGUGAGUCAUGAAAACCUGAGUAAA------CCUCUGGGGACUCAUCCAUUUUUAUUGUGAA ((..---.((((....)))))).......((((.((((((((....((((...))))..(((((((.......((.(((....------.))).)).))))))))))))))).))))... ( -26.50) >DroYak_CAF1 11686 117 + 1 GCAA---AUCCAUUGUUGGGGCAAAAAGAGCGAAGAAGGUGGAAAGCAUAAGGUAUAACGUGAGUCAUGAAAACCUGAGUAAACCUAAACCUCUGGGGACUCAUCCAUUUUUAUUGUGAA ((..---.((((....)))))).......((((.(((((((((.......((((((.((....)).))....))))((((...((((......)))).)))).))))))))).))))... ( -29.70) >consensus GCAA___AUCCAUUGUUGGGGCAAAAAGAGCGAAGAAGGUGGAAAGCAUAAGGUAUAACGUGAGUCAUGAAAACCUGAGUAAA______GCUCAGGGGACUCAUCCAUUUUUAUUGUGAA ........((((....)))).........((((.(((((((((..((.....))......((((((.......((((((...........)))))).))))))))))))))).))))... (-18.03 = -20.07 + 2.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:46 2006