Locus 4730

Sequence ID 2L_DroMel_CAF1
Location 13,552,106 – 13,552,219
Length 113
Max. P 0.954089
window7482

overview

Window 2

Location 13,552,106 – 13,552,219
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.73
Mean single sequence MFE -20.70
Consensus MFE -16.24
Energy contribution -16.80
Covariance contribution 0.56
Combinations/Pair 1.10
Mean z-score -2.32
Structure conservation index 0.78
SVM decision value 1.44
SVM RNA-class probability 0.954089
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13552106 113 - 22407834
--CAAACACUCUGGGUCACAAGAAAAUCAUUCUGUCAAUUCGCUUGGAGUGACAAUAGCGAAAUUAAAUUAAUUAUGCAAAGCAACCCCAUUUGUUUAAUAACAAAAUAC-----ACCCA
--....(((((..(((....((((.....))))........)))..)))))......(((.(((((...))))).)))............((((((....))))))....-----..... ( -19.40)
>DroSec_CAF1 10994 120 - 1
AGCAAACACUCUGGGUCACAAGAAAAACAUUCUGUCAAUUCGCUUGGAGUGACAAUAGCGAAAUUAAAUUAAUUAUGCUAAGCAACCCCAUUUGUUUAAUAACAAAAUACAAAAUACCCA
.((...(((((..(((....((((.....))))........)))..)))))....(((((.(((((...))))).))))).)).......((((((....)))))).............. ( -24.10)
>DroSim_CAF1 11244 115 - 1
AGCAAACACUCUGGGUCACAAGAAAAACAUUUUGUCAAUUCGCUUGGAGUGACAAUAGCGAAAUUAAAUUAAUUAUGCUAAGCAACCCCAUUUGUUUAAUAACAAAAUAC-----ACCCA
.((...(((((..(((.((((((......))))))......)))..)))))....(((((.(((((...))))).))))).)).......((((((....))))))....-----..... ( -24.90)
>DroEre_CAF1 13249 114 - 1
AGCAAACACUCUGGGUCACAAGAAAAACAUUCUGUUAACUCAUUUGAAGUGACAAUAGCGAAAUUAAAUUAAUUAUGCCAAGCAAC-CCAUUUGUUUAAUAACAAAAUAC-----ACCCA
...........(((((..(.............(((((..((....))..)))))...(((.(((((...))))).)))...)..))-)))((((((....))))))....-----..... ( -16.10)
>DroYak_CAF1 11360 114 - 1
AGCAAACACUCUGGGUCACAAGAAAAACAUUCUGUUAAUUCAUUUGAAGUGACAAUAGCGAAAUGAAAUUAAUUAUGCUAGGCAAC-CCAUUUGUUUAAUAACAAAAUAC-----ACCCA
...........(((((..(.............(((((.(((....))).))))).(((((.(((.......))).))))).)..))-)))((((((....))))))....-----..... ( -19.00)
>consensus
AGCAAACACUCUGGGUCACAAGAAAAACAUUCUGUCAAUUCGCUUGGAGUGACAAUAGCGAAAUUAAAUUAAUUAUGCUAAGCAACCCCAUUUGUUUAAUAACAAAAUAC_____ACCCA
.((...((((((..((....((((.....))))........))..))))))....(((((.(((((...))))).))))).)).......((((((....)))))).............. (-16.24 = -16.80 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:45 2006