| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,380,311 – 1,380,403 |
| Length | 92 |
| Max. P | 0.540135 |
| Location | 1,380,311 – 1,380,403 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 81.03 |
| Mean single sequence MFE | -18.12 |
| Consensus MFE | -12.33 |
| Energy contribution | -12.00 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.540135 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1380311 92 - 22407834 A---------CCACCCAGGCAUAUAUGAAAAAAUCCUUCAAUU------U-GAGCCAAGAA---AAGCAAGAAGAUCCUUUU-UACUCCCUUCUUCGGUUCGCACUAAUGAA .---------......((((.....((((.......))))...------.-((((((((((---.((.((((((...)))))-).))...))))).))))))).))...... ( -15.60) >DroSec_CAF1 11958 91 - 1 A---------CCACCCAGGCAUAUAUGAA-AAAUCCUUCAAUU------U-GAGCCAAGAA---UAGCAAGAAGAUCCUUUU-UACUCCCUUCUUCGGUUCGCACUAAUGAA .---------......((((.....((((-......))))...------.-((((((((((---.((.((((((...)))))-).))...))))).))))))).))...... ( -16.10) >DroSim_CAF1 11978 92 - 1 A---------CCAGCCAGGCAUAUAUGAAAAAAUCCUUCAAUU------U-GAGCCAAGAA---AAGCAAGAAGAUCCUUUU-UACUCCCUUCUUCGGUUCGCACUAAUGAA .---------.((...((((.....((((.......))))...------.-((((((((((---.((.((((((...)))))-).))...))))).))))))).))..)).. ( -16.00) >DroEre_CAF1 11594 97 - 1 A---------CCGCCCAGGCAUAUAUGAAAAUAUCCUUCAAUCCCUCAAU-GAGCCAAGAA---AAGCGAGCAGAUCCUUUU-UACUCCC-UCUUUGGUUCGCACUAAUGAA .---------..((..(((.((((......))))))).............-((((((((..---.((.(((.(((.....))-).))).)-).))))))))))......... ( -16.80) >DroYak_CAF1 11834 101 - 1 AAUACACCCAACACCCAGGCAUAUAUGAAAAAAUCCUUCAAUU------U-GAGCCAAGAA---AAGCAAGAAGAUCCUUUU-UACUCCCUUCUUUGGUUCGCACUAAUGAA ................((((.....((((.......))))...------.-((((((((((---.((.((((((...)))))-).))...))).))))))))).))...... ( -15.60) >DroAna_CAF1 12481 100 - 1 A------CCACCUUCAAGGCAUAUAUGACAAAAUCCUUCAAUU------UCGGGCCAGGAUGUUGGGCCGGAAAGCACUUUUGUUCCGCCGCUCCUGGCUCGCACUAAUGAA .------......(((((((.....(((.........)))...------..(((((((((.((..(((.(((..(((....)))))))))))))))))))))).))..))). ( -28.60) >consensus A_________CCACCCAGGCAUAUAUGAAAAAAUCCUUCAAUU______U_GAGCCAAGAA___AAGCAAGAAGAUCCUUUU_UACUCCCUUCUUCGGUUCGCACUAAUGAA ................((((.....((((.......))))...........((((((((((....((..(((((...)))))...))...))))).))))))).))...... (-12.33 = -12.00 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:00 2006