| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,551,232 – 13,551,351 |
| Length | 119 |
| Max. P | 0.545536 |
| Location | 13,551,232 – 13,551,351 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.09 |
| Mean single sequence MFE | -19.20 |
| Consensus MFE | -16.65 |
| Energy contribution | -16.43 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545536 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13551232 119 + 22407834 UAUUGGAAUAAAACAAAAAUAAAAAUAUAAG-AAAAGUGUACGUGACAAGAGCUCGAAAAGAAGUUGCAACAAAUAGCAAAAAUAAUUCGUGCGUGCGAAAAAGUGCUGCGAAGUUUUAU .......(((((((..........((((...-....)))).(((.......((.((((......((((........))))......)))).))(..(......)..).)))..))))))) ( -19.40) >DroEre_CAF1 12414 114 + 1 UAUUGGAAUGAAAUAAAAAUA------UAGGAAAAAGUGUACGUGACAAGAGCUCGAAAAGAAGUUGCAAAAAAUAGCAAAAAUAAUUCGUGCGUGCGGAAAAGUGCUGCGAAGUUUUAU .......(((((((....(((------(........)))).(((.......((.((((......((((........))))......)))).))(..(......)..).)))..))))))) ( -17.60) >DroYak_CAF1 10506 114 + 1 UAUUGGAAUAAAAUAAAAAUA------UAAGAAAAAGUGUACGUGACAAGAGCUCGAAGAGAAGUUGCAAAAAAUAGCAAAAAUAAUUCGUGCGUGCGAAAAAGUGCUGCGAAGCUUUAU .....................------......(((((...(((.......((.((((......((((........))))......)))).))(..(......)..).)))..))))).. ( -20.60) >consensus UAUUGGAAUAAAAUAAAAAUA______UAAGAAAAAGUGUACGUGACAAGAGCUCGAAAAGAAGUUGCAAAAAAUAGCAAAAAUAAUUCGUGCGUGCGAAAAAGUGCUGCGAAGUUUUAU .................................((((..(.(((.......((.((((......((((........))))......)))).))(..(......)..).))))..)))).. (-16.65 = -16.43 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:43 2006