| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,547,436 – 13,547,547 |
| Length | 111 |
| Max. P | 0.896395 |
| Location | 13,547,436 – 13,547,547 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.29 |
| Mean single sequence MFE | -18.93 |
| Consensus MFE | -8.54 |
| Energy contribution | -9.54 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.896395 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13547436 111 + 22407834 UGGCAAAAAAUCCAAAUUAAAGUGUAAUAAAA----AAAAGAGGUCUAACCACUU---UUUAUUUUUUUUU--UUUUGCCUUCCACCAGCCGAACAGCUGAAAAAACACAAAACUGUCGA .(((((((((.....((((.....))))...(----(((((.((.....)).)))---)))........))--)))))))......((((......)))).................... ( -18.70) >DroPse_CAF1 8256 98 + 1 UAGAAAAAAAGACAAAUUAAAGUGUAGUAAAAAAAAAAAAGAAGUUGAACAACUUUUUUCGAG------------U---------CGAAGCGAACAGCUGAAAAAACAGC-AACUGUCGA ..........((((.......((...((.........(((((((((....)))))))))....------------.---------....))..)).((((......))))-...)))).. ( -16.27) >DroSim_CAF1 6244 116 + 1 UGGCAAAAAAUCCAAAUUAAAGUGUAAUAAAA----AAAAGAGGUCUAACCACUUCUUUUUCUUUUUUUUUUAUUUUGCCUUCCACCAGCCGAACAGCUGAAAAAACACAAAACUGUCGA .(((((((.....(((..((((.........(----(((((((((......))))))))))))))..)))...)))))))......((((......)))).................... ( -19.90) >DroEre_CAF1 8506 106 + 1 UGGCAAAAAAUCCAAAUUAAAGUGUAAUAAAA-----AAAGAGGUCUAACCACUUCUUUU---------UUUAUUUUGUCUUCCACCAGUCGAACAGCUGAAAAAACACAAAACUGUCGA .((((...(((....)))...(((((((((((-----((((((((......)))))))))---------))))))...........((((......)))).....)))).....)))).. ( -20.50) >DroYak_CAF1 6515 106 + 1 UGGCAAAAAAUCCAAAUUAAAGUGUAAUAAA------AAAGAGGUCUAACCACUUCUUUU--------UUUUAUGUUGUCUUCCACCAGCCGAACAGCUGAAAAAACACAAAACUGUCGA .((((...............((..(((.(((------((((((((......)))))))))--------)))))..)).........((((......))))..............)))).. ( -19.30) >consensus UGGCAAAAAAUCCAAAUUAAAGUGUAAUAAAA____AAAAGAGGUCUAACCACUUCUUUU________UUUUAUUUUGCCUUCCACCAGCCGAACAGCUGAAAAAACACAAAACUGUCGA .....................((((............((((((((......))))))))...........................((((......)))).....))))........... ( -8.54 = -9.54 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:37 2006