Locus 4724

Sequence ID 2L_DroMel_CAF1
Location 13,546,119 – 13,546,216
Length 97
Max. P 0.996380
window7473

overview

Window 3

Location 13,546,119 – 13,546,216
Length 97
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 91.51
Mean single sequence MFE -25.34
Consensus MFE -21.93
Energy contribution -22.77
Covariance contribution 0.84
Combinations/Pair 1.11
Mean z-score -2.23
Structure conservation index 0.87
SVM decision value 2.69
SVM RNA-class probability 0.996380
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13546119 97 + 22407834
CGACUCCAAGUGGUUAUAAAAAUUCGCGCUUGGCGUUUCUUAUAUUGCCAAAACUAAAAA-AAAAGGCGAAGGAGGAAUGUUAGACUUGGAGAUGCU--C
...((((((((((..........))....((((((((((((...(((((...........-....)))))..)))))))))))))))))))).....--. ( -26.76)
>DroSec_CAF1 4945 96 + 1
CGACUCCAAGCGGUUAUAAAAAUUCGCGCUUGGCGUUUCUUAUAUUGCCAAAACUAAAA--AAAAGGCGAAGGAGAAAUGUUAGACUUGGAGAUGCU--C
...((((((((((..........))))(..(((((((((((...(((((..........--....)))))..)))))))))))..))))))).....--. ( -28.94)
>DroSim_CAF1 4985 98 + 1
CGACUCCAAGCGGUUAUAAAAAUUCGCGCUUGGCGUUUCUUAUAUUGCCAAAACUAAAAAAAAAAGGCGAAGGAGAAAUGUUAGACUUGGAGAUGCU--C
...((((((((((..........))))(..(((((((((((...(((((................)))))..)))))))))))..))))))).....--. ( -28.79)
>DroEre_CAF1 7276 94 + 1
CGACUCCAAGCGGUUAUAAAAAUUCGCGCUUGGAGUUUCUUAUUUCGCCAAU-CCA-AA--AAAAAGCGAAGGAGAAAUGUUAGACUUUGAGAUGCU--C
.(((((((((((..............)))))))))))((((.((((((....-...-..--.....)))))))))).....................--. ( -23.48)
>DroYak_CAF1 5204 97 + 1
CGAAUCCAAGCGGUUAUAAAAAUUCGCGCUUGGCGUUUCUUAUUUCGCCAAA-CUACAA--AAAAAACGAAGGAGAAAUGUUAGACUUUGAGAUGCUCUC
...((((((((((..........))))(..(((((((((((.(((((.....-......--......))))))))))))))))..).))).)))...... ( -18.73)
>consensus
CGACUCCAAGCGGUUAUAAAAAUUCGCGCUUGGCGUUUCUUAUAUUGCCAAAACUAAAA__AAAAGGCGAAGGAGAAAUGUUAGACUUGGAGAUGCU__C
...((((((((((..........))))(..(((((((((((...(((((................)))))..)))))))))))..)))))))........ (-21.93 = -22.77 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:36 2006