| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,542,160 – 13,542,267 |
| Length | 107 |
| Max. P | 0.540269 |
| Location | 13,542,160 – 13,542,267 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 77.14 |
| Mean single sequence MFE | -25.18 |
| Consensus MFE | -14.84 |
| Energy contribution | -15.54 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.540269 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13542160 107 + 22407834 ----UUAUUUUGAUAUUUUUUACCUUCCGCCAAUGCCUUGGACAUCCAUCCGUACCAAUUCCGUU------UGUUUGCUCCGCCUAGAUUCGAUUUUGAAUUGGUGCGUACGGUGAU ----.......................((((.......(((....)))..(((((((((((...(------((....((......))...)))....)))))))))))...)))).. ( -23.70) >DroSec_CAF1 1056 106 + 1 ----UCAUUCUGAUAUC-UUUACCUUCCGCCAAUGCCUUGGACAUCCAACCGUACCAAUUCCUUU------UGUUUGCUCCGCCUAGAUUCGAUUUAGAAUUGGUGCGAACGGUAAU ----.............-.(((((.............((((....)))).(((((((((((...(------((....((......))...)))....)))))))))))...))))). ( -23.80) >DroSim_CAF1 1056 106 + 1 ----UCAUUCUGAUAUC-UUUACCUUCCGCCAAUGCCUUGGACAUCCAACCGUACCAAUUCCUUU------UGUUUGCUCCGCCUAGAUUCGAUUUAGAAUUGGUGCGAACGGUGAU ----.............-.........((((......((((....)))).(((((((((((...(------((....((......))...)))....)))))))))))...)))).. ( -24.90) >DroEre_CAF1 3302 110 + 1 UGUUUUGUGUUGAUAUC-AUUACCUUCCGCCAAUACCUUGGACAUCCAACCGUACCAAUUCCGUU------UGUUUGCUUCGACUAGGUUCGAUUUUAAAUUGGUGCGGACGGUGAU ......(((.((....)-).)))....((((......((((....))))(((((((((((..((.------.....)).((((......)))).....)))))))))))..)))).. ( -28.10) >DroYak_CAF1 1131 106 + 1 ----UUGUUUUGAUAUU-UUUACCUUCCGCCAAUGCCUUGGACAUCCAGCCGUGCCAAUUUCGUU------UGUUUGCUUCGGCUAGACUCGAUUUCAAAUUGGUGCGGACGGUGAU ----.............-.(((((.(((((..(((.((.((....)))).)))((((((((((..------.((((((....)).)))).))).....)))))))))))).))))). ( -32.50) >DroAna_CAF1 1014 105 + 1 ----ACCCUAUCACAUC--UCACCUUCAGCUAAUGCCUUCUUCAUCCAACUGUGCCAAUUUCUCUGCUUAAUGUUCAUGGCGUUGGGAUUCGGUA------UGUUCCGUAGAGUGCA ----.............--..............(((.((((......(((.((((((((..(..((((..........))))..)..))).))))------))))....)))).))) ( -18.10) >consensus ____UCAUUUUGAUAUC_UUUACCUUCCGCCAAUGCCUUGGACAUCCAACCGUACCAAUUCCGUU______UGUUUGCUCCGCCUAGAUUCGAUUUAGAAUUGGUGCGAACGGUGAU ...........................((((......((((....)))).(((((((((((...........(((((.......)))))........)))))))))))...)))).. (-14.84 = -15.54 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:33 2006