Locus 4720

Sequence ID 2L_DroMel_CAF1
Location 13,537,534 – 13,537,642
Length 108
Max. P 0.738194
window7469

overview

Window 9

Location 13,537,534 – 13,537,642
Length 108
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 89.71
Mean single sequence MFE -13.12
Consensus MFE -11.06
Energy contribution -10.66
Covariance contribution -0.40
Combinations/Pair 1.15
Mean z-score -1.47
Structure conservation index 0.84
SVM decision value 0.44
SVM RNA-class probability 0.738194
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13537534 108 + 22407834
GCCGUCUAUUGAUUUUCCUAUCAAUAUUUCCAUUCCAUUUUACUCUCCCUUAUCCUGUCUUUUGCACGGUGUUCUCACGGGCAUAUUGCAUUUCGAUCAAAUAAAU--AU
......(((((((......))))))).......................((((...(((...((((..((((((....))))))..))))....)))...))))..--.. ( -14.90)
>DroSec_CAF1 23594 108 + 1
GCCGUCUAUUGAUUUUCCUAUCAAUAUUUCCAUUCCAUUUUACUCUCCCUUAUCCUGUCUUCUACACGGUGUUCUCACGGGCAUAUUGCAUUUCUAUUAAAUAAAU--AU
.((((.(((((((......)))))))........................((((.(((.....))).)))).....))))((.....)).................--.. ( -12.30)
>DroSim_CAF1 20121 108 + 1
GCCGUCUAUUGAUUUUCCUAUCAAUAUUUCCAUUCCAUUUUACUCUCCCUUAUCCUGUCUUCUACACGGUGUUCUCACGGGCAUAUUGCAUUUCUAUUAAAUAAAU--AU
.((((.(((((((......)))))))........................((((.(((.....))).)))).....))))((.....)).................--.. ( -12.30)
>DroEre_CAF1 26962 108 + 1
GCUUUCUAUUGAUUUUCCUAUCAAUAUUUCCAUUCUAUUUUACUCUCCCUUAUCCUCGUUUCUACACGGUGUUUUCGCGGGCAUAUUGUAUUUCUAUUAAAUAUAU--AU
......(((((((......)))))))....................(((.......(((......)))(((....)))))).....(((((((.....))))))).--.. ( -12.00)
>DroYak_CAF1 24293 110 + 1
GCUUCCUAUUGAUUUCUCUAUCAAUAUUUCCAUUCUAUUUUACCCGCCCUUGUCCUCUUUUCUACACGGUGUUCUCACGGGCAUAUUGCCUUUCUAUUAAAUGUAUUAAC
((....(((((((......)))))))...................((((.(((..........)))..(((....))))))).....))..................... ( -14.10)
>consensus
GCCGUCUAUUGAUUUUCCUAUCAAUAUUUCCAUUCCAUUUUACUCUCCCUUAUCCUGUCUUCUACACGGUGUUCUCACGGGCAUAUUGCAUUUCUAUUAAAUAAAU__AU
(((...(((((((......)))))))..........................................(((....))).)))............................ (-11.06 = -10.66 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:32 2006