Locus 472

Sequence ID 2L_DroMel_CAF1
Location 1,375,989 – 1,376,097
Length 108
Max. P 0.751363
window758

overview

Window 8

Location 1,375,989 – 1,376,097
Length 108
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.15
Mean single sequence MFE -30.16
Consensus MFE -16.89
Energy contribution -18.99
Covariance contribution 2.10
Combinations/Pair 1.21
Mean z-score -1.79
Structure conservation index 0.56
SVM decision value 0.48
SVM RNA-class probability 0.751363
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1375989 108 + 22407834
AUUGCCAGACAUUUGUCUUUC--UCUUGGCCCG----UCGUCCGGGUAUCCUGCUCAAGGCAAAUUCAUCUCUGCCACUUUUGUGCUUCGUCUUCACCUUGAACGGCGAUG------CUC
.(((((((((....))))...--.....(((((----.....)))))...........))))).....................((.((((((((.....))).))))).)------).. ( -28.00)
>DroSec_CAF1 7645 110 + 1
AUUGCCAGACAUUUGUCUUCCUCUCCUGGUCCG----UCGUCCGGGUAUCCUGCUCGAGGCAAAUUCAUCUCUGGCACUUUUGUGCUUCGUCUUCACCUUGAGCGGCGCUG------CUC
...(((((((....))))......(((((.(..----..).)))))......((((((((.............(((((....))))).........)))))))))))....------... ( -33.55)
>DroSim_CAF1 7651 110 + 1
AUUGCCAGACAUUUGUCUUCCUCUCCUGGUCCG----UCGUCCGGGUAUCCUGCUCGAGGCAAAUUCAUCUCUGGCACUUUUGUGCUUCGUCUUCACCUUGAGCGGCGCUG------CUC
...(((((((....))))......(((((.(..----..).)))))......((((((((.............(((((....))))).........)))))))))))....------... ( -33.55)
>DroEre_CAF1 7379 113 + 1
AUUGCCAGACAUUUGUCUUCCUC--UUGGCCCG----UCGUUCGGGUAUCCUGCUCAGGGCGAAUUCAUCUCUGGCACUUUUAUGC-UCGUCUUCACCUUGAACGGCGAUGCUGAUGCUG
..(((((((.(((((((((....--...(((((----.....))))).........))))))))).....))))))).......((-((((((((.....))).))))).))........ ( -34.19)
>DroYak_CAF1 7540 112 + 1
AUUGCCAGACAUUUGUCUUCCUC--UUGGCCCGGGUCUCCUUCGGGUAUCCAGCUCAAGCCAAAUUCAUCUCUGGCACUUUUGCGCUUCGUCUUCACCUUGAACGGCGUUG------CUC
..(((((((....((.......(--(((((..((((..((....)).)))).)).)))).......))..))))))).......((..(((((((.....))).))))..)------).. ( -33.24)
>DroAna_CAF1 8468 86 + 1
AUUGCCAGACAUUUGUCUUUCUC--UCGUCUC------AGUCGGGAUAUGUUGGUAG---------UAUCUCUGGCAUUUUUAUACCUCG----------GAGC-UCCCCG------CUU
..(((((((.((((..(....((--(((....------...)))))......)..))---------.)).))))))).............----------((((-.....)------))) ( -18.40)
>consensus
AUUGCCAGACAUUUGUCUUCCUC__UUGGCCCG____UCGUCCGGGUAUCCUGCUCAAGGCAAAUUCAUCUCUGGCACUUUUGUGCUUCGUCUUCACCUUGAACGGCGCUG______CUC
..(((((((.(((((((((.........(((((.........))))).........))))))))).....)))))))...........(((((((.....))).))))............ (-16.89 = -18.99 +   2.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:59 2006