Locus 4719

Sequence ID 2L_DroMel_CAF1
Location 13,535,445 – 13,535,565
Length 120
Max. P 0.523034
window7468

overview

Window 8

Location 13,535,445 – 13,535,565
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 83.83
Mean single sequence MFE -50.50
Consensus MFE -33.86
Energy contribution -33.25
Covariance contribution -0.61
Combinations/Pair 1.31
Mean z-score -2.05
Structure conservation index 0.67
SVM decision value -0.02
SVM RNA-class probability 0.523034
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13535445 120 + 22407834
CUGCUUGCCCGACUCCUCCAUUGCGGUUCGCAGCUGGGAGAGACUGAUCUGCAGCCGGGCCAUGCGCAUGUCGCCGGCUUUUAGCCGCACCUCCUGGUUGGACGUAAAGCCGGUGGCAUC
..((..(((((.(((..((((((((...))))).)))..))).(((.....))).)))))...))..((((((((((((((...(((.(((....))))))....)))))))))))))). ( -56.70)
>DroPse_CAF1 28725 120 + 1
CUGCUUGUUCGUCUCCUCCAUUUCGGUGCGCAGAUUGGCCAGACUGAUCUGGAUCUUGGCCAUGCGCAUGUUGCCGGCCUUUAGCUUCACUUCCUGGCUGGCCGUGAAGUCGGUGACUUC
..........(((.((...(((((((((((((...((((((((((.....)).)).)))))))))))))...(((((((...((.....))....)))))))..)))))).)).)))... ( -43.90)
>DroSec_CAF1 21469 120 + 1
CUGUUUGCCCGACUCCUCCAUUGCGGUGCGCAGCUGGGAGAGACUGAUCUUCAGCCGGGCCAUGCGCAUGUCGCCGGCUUUUAGCCGCACCUCCUGGUUGGACGUAAAGCCGGUGGCAUC
..((..(((((.(((..((((((((...))))).)))..))).(((.....))).)))))...))..((((((((((((((...(((.(((....))))))....)))))))))))))). ( -55.90)
>DroYak_CAF1 22172 120 + 1
CUGUUUGCUCGACUCCUCCAUUGCGGUGCGCAGCUGGGAGAGACUGAUCUGCAGCCGGGCCAUGCGCAUGUCGCCGGCUUUUAGCCGCACCUCCUGGUUGGCCGAAAAGCCGGUGGCAUU
..((..(((((.(((..((((((((...))))).)))..))).(((.....))).)))))...))..(((((((((((((((.((((.(((....)))))))..))))))))))))))). ( -55.60)
>DroAna_CAF1 23606 120 + 1
CGUCUUGCUGGAGGCCUCCAUUUCGGUGCGUAGCUGGGAGAGACUUAUCUGGAUCCGGGCCAUUCGCAUGUCGCCGGCCUUCAGUGUCACCUCCUGUUUGGUCGUAAGGCCGGCGGCAUU
.....(((.((((((((((((..((((.....))))..)((......))))))....)))).))))))(((((((((((((.......((..((.....))..))))))))))))))).. ( -47.01)
>DroPer_CAF1 28621 120 + 1
CUGCUUGUUCGUCUCCUCCAUUUCGGUGCGCAGAUUGGCCAGACUGAUCUGGAUCUUGGCCAUGCGCAUGUUGCCGGCCUUUAGCUUCACUUCCUGGCUGGCCGUGAAGUCGGUGACUUC
..........(((.((...(((((((((((((...((((((((((.....)).)).)))))))))))))...(((((((...((.....))....)))))))..)))))).)).)))... ( -43.90)
>consensus
CUGCUUGCUCGACUCCUCCAUUGCGGUGCGCAGCUGGGAGAGACUGAUCUGCAGCCGGGCCAUGCGCAUGUCGCCGGCCUUUAGCCGCACCUCCUGGUUGGCCGUAAAGCCGGUGGCAUC
.........................((((((((((.((..(((....)))....)).)))..)))))))(((((((((((((((((.........))))).....))))))))))))... (-33.86 = -33.25 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:31 2006