Locus 4718

Sequence ID 2L_DroMel_CAF1
Location 13,534,786 – 13,534,878
Length 92
Max. P 0.690769
window7467

overview

Window 7

Location 13,534,786 – 13,534,878
Length 92
Sequences 4
Columns 92
Reading direction reverse
Mean pairwise identity 76.66
Mean single sequence MFE -21.93
Consensus MFE -8.90
Energy contribution -9.02
Covariance contribution 0.13
Combinations/Pair 1.17
Mean z-score -2.79
Structure conservation index 0.41
SVM decision value 0.33
SVM RNA-class probability 0.690769
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13534786 92 - 22407834
UACAUAUACAUAUGCGAUAUAUGCGAGUUGCAUUCAUAUGUUAAUAUGUACAUAAAUGGAGGUGUGCAGACUGUGCUUUCUCAUAAUUCCCG
((((((((((((((......((((.....)))).)))))))..))))))).......((((.((((.(((........))))))).)))).. ( -20.20)
>DroSec_CAF1 20810 85 - 1
UACAUAUAUG-------UACAUAUGAGUUGCAUUCAUAUGUUAAUAUGUACAUAAAUGGAGGUGUGCAGACUGUGCUUUCUCAUAAUUCCCG
..(((.((((-------(((((((.....((((....))))..))))))))))).)))((((.(..(.....)..)..)))).......... ( -23.50)
>DroEre_CAF1 20989 72 - 1
--------UA-------UACAUAUGAGUUGCAUUCAUAUGUUAAUACG-----AUAUGAAGGUGUGCAGGACCUGCUUUCUCAUAAUUCCGG
--------..-------....((((((..((((((((((((....)).-----)))))))(((.......))))))...))))))....... ( -16.70)
>DroYak_CAF1 21502 81 - 1
UACUCGUAUG-------UACAUACGAGUUGCAUUCAUAUGCUAAUAUGU----AUAUGAAUGUGUGCAGUCCCUGCUUUCUCAUAAUUCCCG
.((((((((.-------...)))))))).((((((((((((......))----))))))))))..((((...))))................ ( -27.30)
>consensus
UACAUAUAUA_______UACAUACGAGUUGCAUUCAUAUGUUAAUAUGU____AAAUGAAGGUGUGCAGACCCUGCUUUCUCAUAAUUCCCG
..................((((((((((...))))))))))..............((((..(...(((.....))).)..))))........ ( -8.90 =  -9.02 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:29 2006