Locus 4715

Sequence ID 2L_DroMel_CAF1
Location 13,534,188 – 13,534,281
Length 93
Max. P 0.602264
window7462

overview

Window 2

Location 13,534,188 – 13,534,281
Length 93
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 86.93
Mean single sequence MFE -24.35
Consensus MFE -21.81
Energy contribution -22.17
Covariance contribution 0.36
Combinations/Pair 1.04
Mean z-score -1.38
Structure conservation index 0.90
SVM decision value 0.14
SVM RNA-class probability 0.602264
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13534188 93 + 22407834
UUCAGCGAA---------------------------AAGAACUUGAUUACACGUGCGCUAAUUUAGUUGCACGCGAAAACAUGCGAGUAAUCAAAACGGUUGCUGAAGUGCCAGACCGCC
((((((((.---------------------------..(...((((((((..((((((((...))).)))))(((......)))..))))))))..)..))))))))(((......))). ( -26.70)
>DroPse_CAF1 26797 93 + 1
UGCAACGAA---------------------------CAGAACUUGAUUACACGUGCGCUAAUUUAGUUGCACGCGAAAACAUGCGAGUAAUCAAAACGGUUGCUGAAGUGCCAGACCGCC
.((......---------------------------......((((((((..((((((((...))).)))))(((......)))..))))))))...((((((......))..)))))). ( -23.90)
>DroWil_CAF1 22808 117 + 1
UGCAACGAACAAAAACAACAGAAAAAAAAAUGGAAGAAAAACUUGAUUACACGUGCGCUAAUUUAGUUGCACGCGAAAACAUGCGCGUAAUCAAAACGCUCGCUGAAGUGCCAG---GCC
..............................(((.........((((((((..((((((((...))).)))))(((........)))))))))))..((((......))))))).---... ( -23.60)
>DroYak_CAF1 20923 93 + 1
UUCAGCGCA---------------------------AAGAACUUGAUUACACGUGCGCUAAUUUAGUUGCACGCGAAAACAUGCGAGUAAUCAAAACGGUUGCUGAAGUGCCAGACCGCC
((((((((.---------------------------..(...((((((((..((((((((...))).)))))(((......)))..))))))))..).).)))))))(((......))). ( -24.40)
>DroAna_CAF1 22628 93 + 1
UUCAACGAA---------------------------AAGAACUUGAUUACACGUGCGCUAAUUUAGUUGCACGCGAAAACAUGCGAGUAAUCAAAACGGUUGCUGAAGUGCCAGACCGCC
.........---------------------------......((((((((..((((((((...))).)))))(((......)))..))))))))..(((((((......))..))))).. ( -23.60)
>DroPer_CAF1 26747 93 + 1
UGCAACGAA---------------------------CAGAACUUGAUUACACGUGCGCUAAUUUAGUUGCACGCGAAAACAUGCGAGUAAUCAAAACGGUUGCUGAAGUGCCAGACCGCC
.((......---------------------------......((((((((..((((((((...))).)))))(((......)))..))))))))...((((((......))..)))))). ( -23.90)
>consensus
UGCAACGAA___________________________AAGAACUUGAUUACACGUGCGCUAAUUUAGUUGCACGCGAAAACAUGCGAGUAAUCAAAACGGUUGCUGAAGUGCCAGACCGCC
..........................................((((((((..((((((((...))).)))))(((......)))..))))))))..(((((((......))..))))).. (-21.81 = -22.17 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:25 2006