Locus 4710

Sequence ID 2L_DroMel_CAF1
Location 13,514,719 – 13,514,833
Length 114
Max. P 0.915906
window7454

overview

Window 4

Location 13,514,719 – 13,514,833
Length 114
Sequences 3
Columns 114
Reading direction forward
Mean pairwise identity 75.66
Mean single sequence MFE -24.83
Consensus MFE -15.06
Energy contribution -14.40
Covariance contribution -0.66
Combinations/Pair 1.17
Mean z-score -1.96
Structure conservation index 0.61
SVM decision value 1.10
SVM RNA-class probability 0.915906
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13514719 114 + 22407834
GAUAUUGCAGUUUAUGCAAUGUGUGGUAGCUAAAUACAUAUGUAUGUACAUACAUAGAUCGGUAUUGAUUUUUACUGGGAAUCAAUCCGAAACCCCCACAAACCCCACCACUGU
.((((((((.....))))))))(((((...........(((((((....)))))))..((((.(((((((((.....)))))))))))))................)))))... ( -32.90)
>DroSec_CAF1 6128 113 + 1
GAUAUUGUAGUUUAAGCAAUCGGCUGUUGCUACCUCCGCACAUACAUACAUACAUAGAUCGGUAUUGAUUUUUACUGGGAAUCAAUCCGAAACCCCCACA-ACUCCACCACUGU
......(((((...(((.....)))...))))).........................((((.(((((((((.....)))))))))))))..........-............. ( -21.20)
>DroYak_CAF1 6352 99 + 1
GGAAUUGUAAUUGAAAUAAUGAUAU--------------AGAUACAUAGAUACAUAGAUCGGUAUUGAUUUUCACGGGGAAUCAAUCCGAAACCCCCACA-ACUCCACCACGGU
(((.((((...........(((...--------------.(((((...(((......))).))))).....))).((((..((.....))..)))).)))-).)))........ ( -20.40)
>consensus
GAUAUUGUAGUUUAAGCAAUGAGAUGU_GCUA__U_C__ACAUACAUACAUACAUAGAUCGGUAUUGAUUUUUACUGGGAAUCAAUCCGAAACCCCCACA_ACUCCACCACUGU
...(((((.......)))))......................................((((.(((((((((.....)))))))))))))........................ (-15.06 = -14.40 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:17 2006