| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,511,125 – 13,511,215 |
| Length | 90 |
| Max. P | 0.945648 |
| Location | 13,511,125 – 13,511,215 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 95.99 |
| Mean single sequence MFE | -18.55 |
| Consensus MFE | -16.60 |
| Energy contribution | -16.85 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.894666 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13511125 90 + 22407834 CCUCCCUCAUGGGCAAC---AUAUAUUGUAUUAUAUCGUUAUCGGGCCGACAUCCAAAAAAGCAAUUGUCUGUCGCCCCAAACAAUACCGCAU ....((....))(((((---(((((......))))).)))...(((.(((((..(((........)))..))))).)))..........)).. ( -20.60) >DroSec_CAF1 2526 90 + 1 CCUCCCUCAUGGGCAAC---AUAUAUUGUAUUAUAUCGUUAUCGGGCCGACAUCCAAAAAAGCAAUUGUCUGUCGCCCCAAACAAUACCGCAU ....((....))(((((---(((((......))))).)))...(((.(((((..(((........)))..))))).)))..........)).. ( -20.60) >DroEre_CAF1 2455 90 + 1 CCUUCCUCAUGGGCAAC---AUAUAUUGUAUUAUAUCGUUAUCGGGCCAACAUCCAAAAAAGCAAUUGUCUGUCGCCCCAAACAAUACCGCAU ....((....))(((((---(((((......))))).)))...((((..(((..(((........)))..))).))))...........)).. ( -15.50) >DroYak_CAF1 2615 92 + 1 CCUUCCUCAUUGGCAACAUCAUAUAUUGUAUUAUAUCGUUAUCGGGCCGACAUCCAA-AAAGCAAUUGUCUGUCGCCCCAAACAAUACCGCAU ..........((....)).....((((((........(....)(((.(((((..(((-.......)))..))))).)))..))))))...... ( -17.50) >consensus CCUCCCUCAUGGGCAAC___AUAUAUUGUAUUAUAUCGUUAUCGGGCCGACAUCCAAAAAAGCAAUUGUCUGUCGCCCCAAACAAUACCGCAU ............(((((...(((((......))))).)))...(((.(((((..(((........)))..))))).)))..........)).. (-16.60 = -16.85 + 0.25)
| Location | 13,511,125 – 13,511,215 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 95.99 |
| Mean single sequence MFE | -27.65 |
| Consensus MFE | -25.21 |
| Energy contribution | -25.02 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.945648 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13511125 90 - 22407834 AUGCGGUAUUGUUUGGGGCGACAGACAAUUGCUUUUUUGGAUGUCGGCCCGAUAACGAUAUAAUACAAUAUAU---GUUGCCCAUGAGGGAGG .....((((((((((((.(((((..(((........)))..))))).)))))..)))))))....((((....---))))(((....)))... ( -29.60) >DroSec_CAF1 2526 90 - 1 AUGCGGUAUUGUUUGGGGCGACAGACAAUUGCUUUUUUGGAUGUCGGCCCGAUAACGAUAUAAUACAAUAUAU---GUUGCCCAUGAGGGAGG .....((((((((((((.(((((..(((........)))..))))).)))))..)))))))....((((....---))))(((....)))... ( -29.60) >DroEre_CAF1 2455 90 - 1 AUGCGGUAUUGUUUGGGGCGACAGACAAUUGCUUUUUUGGAUGUUGGCCCGAUAACGAUAUAAUACAAUAUAU---GUUGCCCAUGAGGAAGG (((.(((((((((((((.(((((..(((........)))..))))).)))))..)))))).....((((....---)))))))))........ ( -24.40) >DroYak_CAF1 2615 92 - 1 AUGCGGUAUUGUUUGGGGCGACAGACAAUUGCUUU-UUGGAUGUCGGCCCGAUAACGAUAUAAUACAAUAUAUGAUGUUGCCAAUGAGGAAGG .....((((((((((((.(((((..(((.......-)))..))))).)))))..)))))))....((((((...))))))((.....)).... ( -27.00) >consensus AUGCGGUAUUGUUUGGGGCGACAGACAAUUGCUUUUUUGGAUGUCGGCCCGAUAACGAUAUAAUACAAUAUAU___GUUGCCCAUGAGGAAGG .....((((((((((((.(((((..(((........)))..))))).)))))..)))))))...................((.....)).... (-25.21 = -25.02 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:13 2006