Locus 4707

Sequence ID 2L_DroMel_CAF1
Location 13,508,164 – 13,508,284
Length 120
Max. P 0.643767
window7447

overview

Window 7

Location 13,508,164 – 13,508,284
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 88.72
Mean single sequence MFE -31.18
Consensus MFE -25.91
Energy contribution -25.00
Covariance contribution -0.91
Combinations/Pair 1.38
Mean z-score -1.87
Structure conservation index 0.83
SVM decision value 0.23
SVM RNA-class probability 0.643767
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13508164 120 - 22407834
UCAAACAAGUUGUCAUUCCAUUGAGGGAAGUUAAUUUAUCGCUCACAGUAAAUUAACUUCAAUGACCCACCGAUUGAUGCGCCGAUUGGCAGUAGCUAAGGGCAUAACCGAAUGAUUAAA
...........(((((((........(((((((((((((........))))))))))))).(((.(((..((((((......))))))((....))...))))))....))))))).... ( -31.10)
>DroSec_CAF1 106916 120 - 1
UCAAACAAGUUGUCAUUCCAUUGAGGGAAGUUAAUUUAUCGCUCACAGUAAAUUAACUUCAAUGACCCACCGAUUGAUGCGCCGAUUGGCAGUAGCUAAGGUCAUAACCGAAUGAUUAAA
...........(((((((........(((((((((((((........))))))))))))).((((((...((((((......))))))((....))...))))))....))))))).... ( -31.90)
>DroSim_CAF1 108463 119 - 1
UCAAACAAGUUGUCAUUCCAUUGAGGGAAGUUAAUUUAUCGCUCACAGUAAAUUAACUUCAAUGACCCACCGAUUGAUGCGCCGAUUGGCAGUAGCUAAGGGCAUAACCGAAUGAU-AAA
.........(((((((((........(((((((((((((........))))))))))))).(((.(((..((((((......))))))((....))...))))))....)))))))-)). ( -33.70)
>DroEre_CAF1 111383 120 - 1
UCACACAAGUUGUCAUUUCAUUGAGCGAAGUUAAUUUAUCGCUCACAGUAAAUUAACUUCAAUGACCCUCCGAUUGAUGCGCCGAUUGGCAGUAGCUAAAGGCAUAACCGAAUGAUUAAA
...........(((((((.....((((((((((((((((........))))))))))))).......(((((((((......))))))).))..)))...((.....))))))))).... ( -28.80)
>DroYak_CAF1 109333 120 - 1
UCAAACAAGUUGUCAUUCCAUUGAGGGAAGUUAAUUUAUCGCUCACAGUAAAUUAACUUCAAUGACCCACCGAUUGAUGCGCCGAUUAGCAGUAGCUAGGGGCAUAACCGAAUGAUUAAA
...........(((((((((((((....(((((((((((........)))))))))))))))))............((((.((...((((....)))))).))))....))))))).... ( -30.80)
>DroAna_CAF1 172281 118 - 1
CCGAACAAGUUGUCAUUCCAUUGGCGAAGGUUAAUUUAUCGCUCGCAGCAAAUGAACUUAAACAGCCCACUGAUUA--CCGCUGAUGGGCAGUAGCUUGGGGUGAAGUCGGGCGGCUAAA
.......(((((((....((((.((((.(((......)))..))))....))))........((.((((..(.(((--(.(((....))).))))).)))).))......)))))))... ( -30.80)
>consensus
UCAAACAAGUUGUCAUUCCAUUGAGGGAAGUUAAUUUAUCGCUCACAGUAAAUUAACUUCAAUGACCCACCGAUUGAUGCGCCGAUUGGCAGUAGCUAAGGGCAUAACCGAAUGAUUAAA
...........(((((((........(((((((((((((.(....).)))))))))))))....................(((..(((((....))))).)))......))))))).... (-25.91 = -25.00 +  -0.91)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:11 2006