Locus 4703

Sequence ID 2L_DroMel_CAF1
Location 13,503,031 – 13,503,127
Length 96
Max. P 0.604673
window7442

overview

Window 2

Location 13,503,031 – 13,503,127
Length 96
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 91.48
Mean single sequence MFE -18.35
Consensus MFE -14.77
Energy contribution -14.97
Covariance contribution 0.20
Combinations/Pair 1.05
Mean z-score -2.21
Structure conservation index 0.80
SVM decision value 0.14
SVM RNA-class probability 0.604673
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13503031 96 + 22407834
AAACA---------AGUAAACCCAACAAAACCAAGUUAAUGGGU-------UUCCAAAAAAGAACGACAAAAUACGAGAGAUCGUGUAA-AAGUUUGGCAUUUUGCCCUAAAA
((((.---------.(.(((((((((........))...)))))-------)).)................((((((....))))))..-..))))(((.....)))...... ( -18.00)
>DroSec_CAF1 101810 96 + 1
AAACA---------AGUAAACCCAACAAAACCAAGUUAAUGGGU-------UUCCAAAAAAGAACGACAAAAUACGAGAGAUCGUGUAA-AAGUUUGGCAUUUUGCCCUAAAA
((((.---------.(.(((((((((........))...)))))-------)).)................((((((....))))))..-..))))(((.....)))...... ( -18.00)
>DroSim_CAF1 103352 96 + 1
AAACA---------AGUAAACCCAACAAAACCAAGUUAAUGGGU-------UUCCAAAAAAGAACGACAAAAUACGAGAGAUCGUGUAA-AAGUUUGGCAUUUUGCCCUAAAA
((((.---------.(.(((((((((........))...)))))-------)).)................((((((....))))))..-..))))(((.....)))...... ( -18.00)
>DroEre_CAF1 106324 96 + 1
AAACA---------AGUAAACCCAACAAAACCAUGUUAAUGGGU-------UUCCAAAAAAGAACGACAAAAUACGAGAGAUCGUGUAA-AAGUUUGGCAUUUUGCCCUAAAA
((((.---------.(.((((((((((......)))...)))))-------)).)................((((((....))))))..-..))))(((.....)))...... ( -19.10)
>DroYak_CAF1 104233 97 + 1
AAACA---------AGUAAACCCAACAAAACCAAGUUAAUGGGU-------UUCCAAAAAAGAACGACAAAAUACGAGAGAUCGUGUAAAAAGUUUGGCAUUUUGCCCUAAAA
.....---------.(.(((((((((........))...)))))-------)).)......((((......((((((....)))))).....))))(((.....)))...... ( -18.20)
>DroAna_CAF1 167693 112 + 1
CAACAAACAACUGAAGUGAACCCAACAAAACCAAGUCAAUGGGUUGUGUUUUUCCAAAAAAGGACGACAAAUGACGAGAGAUCGUGUAA-AAGUUUGGCAUACUGCCCUAAAA
...(((((..........((((((((........))...)))))).((((..(((......))).))))....((((....))))....-..)))))((.....))....... ( -18.80)
>consensus
AAACA_________AGUAAACCCAACAAAACCAAGUUAAUGGGU_______UUCCAAAAAAGAACGACAAAAUACGAGAGAUCGUGUAA_AAGUUUGGCAUUUUGCCCUAAAA
...................(((((((........))...))))).................((((......((((((....)))))).....))))(((.....)))...... (-14.77 = -14.97 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:06 2006