Locus 4702

Sequence ID 2L_DroMel_CAF1
Location 13,499,652 – 13,499,752
Length 100
Max. P 0.636458
window7441

overview

Window 1

Location 13,499,652 – 13,499,752
Length 100
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 78.58
Mean single sequence MFE -11.80
Consensus MFE -8.97
Energy contribution -8.75
Covariance contribution -0.22
Combinations/Pair 1.15
Mean z-score -1.04
Structure conservation index 0.76
SVM decision value 0.21
SVM RNA-class probability 0.636458
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13499652 100 + 22407834
CCAACCUGCGCUGUUCGAAGCUAUCCCAAAUUGAAAACAAAAACUAAAAACAUAGCCAGGGUAUUAUAAAGUUUGUAUACCAAACAUAUCGUUAACUAAA
....((((.(((((..((.....)).....(((....)))...........)))))))))..........(((((.....)))))............... ( -12.70)
>DroPse_CAF1 142138 81 + 1
CCAACCCACGCUGUUCUAAACUAUCCCC-------------------AAACUUAGCCAGGGUAUUAUAAAGUUUGUAUACCAAACAUAUCGUUAACUCAA
...((((..((((...............-------------------.....))))..))))........(((((.....)))))............... ( -10.95)
>DroGri_CAF1 110481 79 + 1
CCAACCCGCGCUGUCUAAAGCUAUCCCUAU--------------------UUUAGUCAGGGUAUUAUAAAGUUUGUAUACCA-ACAUAUCGUUAAAUAAA
.......((((((.((((((.........)--------------------))))).)))(((((.(((.....)))))))).-......)))........ ( -10.80)
>DroEre_CAF1 102977 100 + 1
CCAACCUGCGCUGUUCUAAGCUAUCCCAAAUUAAUAAGAAAAACUAAAAACAUAGCCAGGGUAUUAUAAAGUUUGUAUACCAAACAUAUCGUUAACUAAA
....((((.(((((.....................................)))))))))..........(((((.....)))))............... ( -12.29)
>DroAna_CAF1 162811 89 + 1
CCAACCUGCGCUGUUCUAAGCUAUCGA-----------GAAAACCAACCACAUAGCCAGGGUAUUAUGAAGUUUGUAUACCAAACAUAUCGUUAACUAAA
....((((.((((((((.........)-----------))...........)))))))))((...((((.(((((.....)))))...))))..)).... ( -13.10)
>DroPer_CAF1 119617 81 + 1
CCAACCCACGCUGUUCUAAACUAUCCCC-------------------AAACUUAGCCAGGGUAUUAUAAAGUUUGUAUACCAAACAUAUCGUUAACUCAA
...((((..((((...............-------------------.....))))..))))........(((((.....)))))............... ( -10.95)
>consensus
CCAACCCGCGCUGUUCUAAGCUAUCCCA___________________AAACAUAGCCAGGGUAUUAUAAAGUUUGUAUACCAAACAUAUCGUUAACUAAA
...((((..((((.......................................))))..))))........(((((.....)))))............... ( -8.97 =  -8.75 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:05 2006