Locus 47

Sequence ID 2L_DroMel_CAF1
Location 199,083 – 199,182
Length 99
Max. P 0.807959
window67

overview

Window 7

Location 199,083 – 199,182
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 77.85
Mean single sequence MFE -39.98
Consensus MFE -24.24
Energy contribution -25.18
Covariance contribution 0.95
Combinations/Pair 1.40
Mean z-score -1.75
Structure conservation index 0.61
SVM decision value 0.64
SVM RNA-class probability 0.807959
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 199083 99 - 22407834
AAGUUGGUGGUAGCUGCUGUUGUUGCGGUUGAGGCACCACCGACGCCUUUGAGCUGACCACGUGCAAUAUUUGCGGCUGGGCUGCUGAUGCCGCUUGCU
..(((((((((.((((((((....)))))...))))))))))))((...(.(((...(((..((((.....))))..)))...))).)....))..... ( -35.70)
>DroPse_CAF1 16368 93 - 1
AGGUGGGCGGCAGCUGC------UGCGGCUGCGGCACCACGGAAGCCUUGGAGCUUACGACAUGCAGGAUCUGCGGUGGUGCUGCAGAUGUUGCCUGCU
.((..(((((((((...------.))..(((((((((((((.((((......)))).)....(((((...))))))))))))))))).)))))))..)) ( -48.80)
>DroEre_CAF1 15274 99 - 1
AAGUAGGUGGUAGCUGCUGUUGUUGCGGCUGAGGCACCACCGACGCCUUUGAGCUGACCACAUGCAAUAUUUGCGGUGGGGCUGCUGAUGCCGCUUGCU
.(((((((((((((.(((.......((((((((((.........)))))..))))).((((.((((.....))))))))))).)))...)))))))))) ( -41.20)
>DroWil_CAF1 15612 84 - 1
AUGUGGGUG---------------GAGGUUGAGCAACUACAGAAGCCUUGGAGCUGACCACAUGAAGGAUUUGCGGCGGUGCUGCCGAUGUGGCCUGUU
(((((((((---------------(..(.....)..))))...(((......)))..))))))..(((.....(((((....)))))......)))... ( -24.40)
>DroYak_CAF1 14403 99 - 1
AAGUAGGUGGUAGCUGCUGUGGUUGCGGCUGAGGCACCACCGACGCCUUCGAGCUGACCACAUGCAAUAUUUGCGGUGGGGCUGCUGAUGCCGCGUGCU
.((((.((((((..(((((((((..((((((((((.........)))))..))))))))))).)))......((((.....))))...)))))).)))) ( -41.00)
>DroPer_CAF1 16563 93 - 1
AGGUGGGCGGCAGCUGC------UGCGGCUGCGGCACCACGGAAGCCUUGGAGCUUACGACAUGCAGGAUCUGCGGUGGUGCUGCAGAUGUUGCCUGCU
.((..(((((((((...------.))..(((((((((((((.((((......)))).)....(((((...))))))))))))))))).)))))))..)) ( -48.80)
>consensus
AAGUGGGUGGUAGCUGC______UGCGGCUGAGGCACCACCGAAGCCUUGGAGCUGACCACAUGCAAGAUUUGCGGUGGGGCUGCUGAUGCCGCCUGCU
.((((((((((((((((.......))))))..(((.((((....((......))........(((((...))))))))).)))......)))))))))) (-24.24 = -25.18 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:08 2006