Locus 4694

Sequence ID 2L_DroMel_CAF1
Location 13,487,101 – 13,487,204
Length 103
Max. P 0.781650
window7427

overview

Window 7

Location 13,487,101 – 13,487,204
Length 103
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 83.46
Mean single sequence MFE -28.88
Consensus MFE -23.78
Energy contribution -23.37
Covariance contribution -0.41
Combinations/Pair 1.23
Mean z-score -1.89
Structure conservation index 0.82
SVM decision value 0.56
SVM RNA-class probability 0.781650
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13487101 103 + 22407834
UUUCUUUGUAUAUGUGUAACGUAAUGAUCACCUGCGUGAUUGCCU------C-UAUGCAAUUGCGCUGUGCCGCUUACGUUACCGUCUUGCAGUUGGUUGUAAUUUGAAA
.....(((((.(((.(((((((((.(..(((..(((..(((((..------.-...)))))..))).)))...)))))))))))))..)))))................. ( -32.10)
>DroVir_CAF1 136847 103 + 1
UUAAUUUUUGUAUGUGCAACGUAUUGAACACUUACGUAAUUGCUG------CAAACGCAUCAACGUUGUGCCAUU-ACGUUGCCGUCUUGCAGUUGGUUGUAAUUUGAAA
.(((((.(((((((.((((((((.((..(((..((((...(((..------.....)))...)))).))).)).)-))))))))))...))))..))))).......... ( -25.20)
>DroPse_CAF1 129059 109 + 1
UUUCUUUGUGUAUGUGUAACGUAAUGAUCAUCUGCGUGAUUGCCCAUUACGU-UGUGCAAUUACGUUGUGCCGCUUACGUUGCCGUCUUGCAGUUGGUUGUAAUUUGAAA
.....(((((.(((.(((((((((.(..(((..((((((((((.((......-)).)))))))))).)))...)))))))))))))..)))))................. ( -30.10)
>DroGri_CAF1 95387 104 + 1
UUUGUUUUUGUAUGUGUAACGUAAUGAACACUUACGUAAUUGCCG------UAAACGCAACAACGUUGUGCCGUUUACGUUGCCGUCUUGCAGUUGGUUGUAAUUUGAAA
...........(((.(((((((((....(((..((((..((((..------.....))))..)))).)))....)))))))))))).((((((....))))))....... ( -23.30)
>DroAna_CAF1 149904 103 + 1
AUUCUUUGUGUAUGUGUAACGUAAUGAUCACCUGCGUGGUUGCCG------C-AAUGCAAUGGCGUAGUGUCGCUUACGUUACCGUCUUGCAGUUGGUUGUAAUUUGAAA
.....(((((.(((.((((((((((((.(((.(((((.(((((..------.-...))))).))))))))))).))))))))))))..)))))................. ( -32.50)
>DroPer_CAF1 105347 109 + 1
UUUCUUUGUGUAUGUGUAACGUAAUGAUCAUCUGCGUGAUUGCCCAUUACGU-UGUGCAAUUACGUUGUGCCGCUUACGUUGCCGUCUUGCAGUUGGUUGUAAUUUGAAA
.....(((((.(((.(((((((((.(..(((..((((((((((.((......-)).)))))))))).)))...)))))))))))))..)))))................. ( -30.10)
>consensus
UUUCUUUGUGUAUGUGUAACGUAAUGAUCACCUGCGUGAUUGCCG______C_AAUGCAAUUACGUUGUGCCGCUUACGUUGCCGUCUUGCAGUUGGUUGUAAUUUGAAA
...........(((.(((((((((....(((..((((.(((((.............))))).)))).)))....)))))))))))).((((((....))))))....... (-23.78 = -23.37 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:52 2006