Locus 469

Sequence ID 2L_DroMel_CAF1
Location 1,367,736 – 1,367,855
Length 119
Max. P 0.920518
window753

overview

Window 3

Location 1,367,736 – 1,367,855
Length 119
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 88.49
Mean single sequence MFE -37.99
Consensus MFE -28.80
Energy contribution -31.92
Covariance contribution 3.12
Combinations/Pair 1.03
Mean z-score -2.25
Structure conservation index 0.76
SVM decision value 1.13
SVM RNA-class probability 0.920518
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1367736 119 - 22407834
CUUCUGAGGCGAUUAUCUGGUUUCGCUCGGGCCCAUAAAUUUGUCCACGCCCAUAACUGGGCUGACAACUUAAGUGCGGUCAUGUUUUUGGGGUCCAGUUCUCCAGAUCUCCAGCCAGA
.......(((....((((((....(((.((((((..((((.((.((.((((((....))))).....((....))).)).)).))))...)))))))))...)))))).....)))... ( -42.20)
>DroSec_CAF1 124729 119 - 1
CUUCUGAGGCGAUUAUCUGGUUUCGCUCGGCCCCAUAAAUUUGUCCACGCCCAUAACUGAGCUGACAACUUAAGUGCGGUCAUGUUUUUGGGGUCCAGUUCUCCAGAUCUCCAGCCAGA
.......(((....((((((....(((.(((((((.((((.((.((.(((.......((......))......))).)).)).)))).))))))).)))...)))))).....)))... ( -38.12)
>DroSim_CAF1 129167 119 - 1
CUUCUGAGGCGAUUAUCUGGUUUCGCUCGGCCCCAUAAAUUUGUCCACGCCCAUAACUGAGCUGACAACUUAAGUGCGGUCAUGUUUUUGGGGUCCAGUUCUCCAGAUCUCCAGCCAGA
.......(((....((((((....(((.(((((((.((((.((.((.(((.......((......))......))).)).)).)))).))))))).)))...)))))).....)))... ( -38.12)
>DroEre_CAF1 143096 119 - 1
CUUCUGAGGCGAUUAUCUGGUUUCGCUCGGUCCCAUAAAUUUGUCCACGCCCAUAACUGGGCUGACAACUUAAGUGCGGUCAUGUUUUUGGGGUCCAGUUCUCCAGAUCUCCAUCCAGG
...(((.((.((...(((((....(((.(..((((.((((.((.((.((((((....))))).....((....))).)).)).)))).))))..).)))...))))))).))...))). ( -38.60)
>DroAna_CAF1 150901 97 - 1
AUACCAAGGCGAUUAUCUCGUUUUGCUGGG-CCCAUAAAUUUGUCCACGCCCAUAACUGGGCUGACAACUUAAGUGCGGUCAUGUUUUUGGGGUCCUG---------------------
....((((((((.....))))))))..(((-(((..((((.((.((.((((((....))))).....((....))).)).)).))))...))))))..--------------------- ( -32.90)
>consensus
CUUCUGAGGCGAUUAUCUGGUUUCGCUCGGCCCCAUAAAUUUGUCCACGCCCAUAACUGGGCUGACAACUUAAGUGCGGUCAUGUUUUUGGGGUCCAGUUCUCCAGAUCUCCAGCCAGA
.......(((....((((((....(((.(((((((.((((.((.((.((((((....))))).....((....))).)).)).)))).))))))).)))...)))))).....)))... (-28.80 = -31.92 +   3.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:54 2006