Locus 4688

Sequence ID 2L_DroMel_CAF1
Location 13,473,490 – 13,473,599
Length 109
Max. P 0.508117
window7411

overview

Window 1

Location 13,473,490 – 13,473,599
Length 109
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 85.16
Mean single sequence MFE -23.88
Consensus MFE -15.64
Energy contribution -16.48
Covariance contribution 0.84
Combinations/Pair 1.12
Mean z-score -1.76
Structure conservation index 0.65
SVM decision value -0.05
SVM RNA-class probability 0.508117
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13473490 109 + 22407834
GUCUGAUAUCAGCCCAAAAAAAAACUUGAACUUUCAUUGCACGAACAUGUUAAUGAAGUGGUAUA-AAUGGUUGAAAAGAGAUUGCAAAGAGUUCAAAGUUUAGGGGUCA
...........((((......(((((((((((((..(((((........(((((.(.........-..).)))))........)))))))))))).))))))..)))).. ( -19.99)
>DroSec_CAF1 72893 104 + 1
GUCUGAUAUCAGCCCC------AACUUGAACUUUCAUUGCACGAACAUGUUAAUGAAGUGGAAUAAAAUGGCUGAAAAGAGAUUGCAAAGAGUUUAAAGUUUAGGGGGCA
...........(((((------((((((((((((.(((.(((...(((....)))..))).)))..(((..((....))..)))....))))))).)))))...))))). ( -25.90)
>DroSim_CAF1 74192 108 + 1
GUCUGAUAUCAGCCCCGA--AAAACUUGAACUUUCAUUGCACGAACAUGUUAAUGAAGUGGAAUAAAAUGGCUGAAAAGAUAUUGCAAAGAGUUGAAAGUUUAGGGGGCA
...........(((((..--.....(((((((((((((.(((...(((....)))..))).)))..((((.((....)).))))..........))))))))))))))). ( -26.91)
>DroEre_CAF1 77558 104 + 1
GUCUGAUAUCAGCCCA-A--AAAACCUGAACUUUCAUUGCACGAACCUUUUAAUGAAGUGGAAUAAAAUGGUCGAAAAGAGAUUGCA---AGUUGAAAGUUUGGGGGGCA
...........((((.-.--....((..((((((((((((((((.(((((((...........))))).))))).........))))---)..))))))))..)))))). ( -27.70)
>DroYak_CAF1 74406 94 + 1
-------------CCA-C--AAAACUUGAACUUUCAUUGCACGAACAUGUUAAUGAAGUGGAAGAAAAUGGUUGAAAACAGAUUGCUAAGAGUUGAAAGUUUAGGGGGCA
-------------...-.--....((((((((((((((.(((...(((....)))..))).)).....((((............)))).....))))))))))))..... ( -18.90)
>consensus
GUCUGAUAUCAGCCCA_A__AAAACUUGAACUUUCAUUGCACGAACAUGUUAAUGAAGUGGAAUAAAAUGGUUGAAAAGAGAUUGCAAAGAGUUGAAAGUUUAGGGGGCA
...........((((.........((((((((((((((.(((...(((....)))..))).)).......((............)).......)))))))))))))))). (-15.64 = -16.48 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:38 2006