Locus 4684

Sequence ID 2L_DroMel_CAF1
Location 13,462,389 – 13,462,480
Length 91
Max. P 0.939703
window7401

overview

Window 1

Location 13,462,389 – 13,462,480
Length 91
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 91.88
Mean single sequence MFE -20.84
Consensus MFE -16.62
Energy contribution -16.98
Covariance contribution 0.36
Combinations/Pair 1.10
Mean z-score -2.04
Structure conservation index 0.80
SVM decision value 1.28
SVM RNA-class probability 0.939703
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13462389 91 - 22407834
GUCAAUCGAAAUAAUUGAAGGUGGAAUUUAAAAGUAUCUGCUUUUAGUCG---CU--AUUCCUUUUCAUUCUAUUAUUGAUUGAUUCGCUUUUGAG
(((((((((((((..((((((.(((((((((((((....))))))))...---..--)))))))))))...)))).)))))))))........... ( -21.60)
>DroSec_CAF1 61969 91 - 1
GUCAAUCGAAAUAAUUGAAGGUGGAAUUUAAAAGUAUCUGCUUUUAGUCG---CU--UUUCCUUUUCUUUUUAUUAUUGAUUGAUUCGCUUUUGAG
((((((((((((((..(((((.((...((((((((....))))))))...---))--...))))).....))))).)))))))))........... ( -21.10)
>DroSim_CAF1 63177 91 - 1
GUCAAUCGAAAUAAUUGAAGGUGGAAUUUAAAAGUAUCUGCUUUUAGUCG---CU--UUUCCUUUUCAUUCUAUUAUUGAUUGAUUCGCUUUUGAG
(((((((((((((..((((((.((((.((((((((....))))))))...---..--.))))))))))...)))).)))))))))........... ( -20.80)
>DroEre_CAF1 66539 96 - 1
GUCAAUCGAAAUAAUUGAAGGUGGAAUUUAAAAGUAUCUGCCGUUGGUCGUAUCUGCUUUUCCUUGCAUUCUAUUAUUGAUUGAUUUGCCUUUGAG
(((((((((.(..((..(.((..(((((....))).))..)).)..))..).))(((........)))..........)))))))........... ( -18.50)
>DroYak_CAF1 62907 93 - 1
GUCAAUCGAAAUAAUUGAAGGUGGAAUUUAAAAGUAUCUGCUUUUAGUCG---CUGCUUUUCCUUGCAUUCUAUUAUUGAUUGAUUCGCCUUUGAG
.((((.((((.((((..(..(((((((((((((((....))))))))...---..((........)))))))))..)..)))).))))...)))). ( -22.20)
>consensus
GUCAAUCGAAAUAAUUGAAGGUGGAAUUUAAAAGUAUCUGCUUUUAGUCG___CU__UUUCCUUUUCAUUCUAUUAUUGAUUGAUUCGCUUUUGAG
(((((((((((((..((((((.((((.((((((((....))))))))...........))))))))))...)))).)))))))))........... (-16.62 = -16.98 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:29 2006