Locus 4683

Sequence ID 2L_DroMel_CAF1
Location 13,448,519 – 13,448,636
Length 117
Max. P 0.554766
window7400

overview

Window 0

Location 13,448,519 – 13,448,636
Length 117
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 81.93
Mean single sequence MFE -33.54
Consensus MFE -21.74
Energy contribution -22.83
Covariance contribution 1.09
Combinations/Pair 1.36
Mean z-score -1.63
Structure conservation index 0.65
SVM decision value 0.04
SVM RNA-class probability 0.554766
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13448519 117 + 22407834
ACUAAGAUCUUAAGCAAAUCGCUACCAAA--AUUUUUGGCAAUGAUCAGAAGGGGUCGUUCUUUUAGUCUGGCCAGCUCGAGAGCGGGAAGUAUCUGUUCCACUUGAUCAAUCUUAGCC
.(((((((....(((.....))).((((.--....))))...((((((((...(((((..(.....)..)))))...))(.(((((((.....))))))))...))))))))))))).. ( -29.00)
>DroSec_CAF1 55448 117 + 1
ACUAAGAUCUUAAGCAAAUCGCUACCAAA--AUUUUUGGCAAUGAUCAGAAGGGGUCGUUCUUUUAAUCUCGCCAACUCGAGAGCGCGAAGGAUCUGAUCCACUUGAUCAAUUUUGGCC
.(((((((....(((.....))).((((.--....))))...(((((((...((((((.((((((..(((((......)))))....))))))..))))))..)))))))))))))).. ( -31.20)
>DroSim_CAF1 56623 117 + 1
ACUAAGAUCUUAAGCAAAUCGCUACCAAA--AUUUUUGGCAAUGAUCAGAAGGGGUCGUUCCUUUAAUCUCGCCCACUCGAGAGCGGGAAGGAUCUGAUCCACUUGAUCAAUUUUGGCC
.(((((((....(((.....))).((((.--....))))...(((((((...((((((.((((((..(((((......)))))....))))))..))))))..)))))))))))))).. ( -35.00)
>DroEre_CAF1 59789 117 + 1
ACCAAGAUCUUUAGCAAAUCGCUGCCAAA--AUUUUUGGCAAUGAUCAGAAGGGGUCGUUCUUUCAGUCUGGCCAACUCCAGAGCGGGCAGGAUCUGUUCCACUUGAUCAAUCUCUGCC
.((..(((((((..(..((((.((((((.--....)))))).))))..).)))))))..........(((((......)))))..))(((((((.((.((.....)).))))).)))). ( -31.30)
>DroYak_CAF1 56303 117 + 1
ACCAAGAUCUUAAGCAAAUCGCUGCCAAA--AUUUUUGGCAACUAUCAGAAGGGGACGUUCUUUCAGUCUGGCCAACUCCAGAGCGGGAAGGAUCUGUUCCACUUGAUCAAUCUUGGCC
.(((((((....(((.....)))(((((.--....)))))....(((((...(((((((((((((..(((((......)))))...))))))))..)))))..)))))..))))))).. ( -37.90)
>DroPer_CAF1 70357 117 + 1
ACCAAAGCCUUUACUACCU--CUUCUGAUAUAUCAGUGGCUAUGAUCAGGAGCGGUUGUUCCCUGCUCUUGGCCAACUCCAGAGCGGGCAGAAUAUCUUCCAGCCGUUCAACGUGGGCC
.(((.((((..........--...((((....)))).))))........(((((((((...((((((((.((......))))))))))..(((....))))))))))))....)))... ( -36.84)
>consensus
ACCAAGAUCUUAAGCAAAUCGCUACCAAA__AUUUUUGGCAAUGAUCAGAAGGGGUCGUUCUUUUAGUCUGGCCAACUCCAGAGCGGGAAGGAUCUGUUCCACUUGAUCAAUCUUGGCC
.(((((((................(((((.....)))))...(((((((((.(((((.(((((....(((((......)))))..))))).))))).)))....))))))))))))).. (-21.74 = -22.83 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:28 2006