| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,444,494 – 13,444,589 |
| Length | 95 |
| Max. P | 0.574033 |
| Location | 13,444,494 – 13,444,589 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 77.56 |
| Mean single sequence MFE | -27.85 |
| Consensus MFE | -18.36 |
| Energy contribution | -17.87 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.574033 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13444494 95 - 22407834 CUACUGAACU------UUACCCCACCAGAUAUCCAUACUACUUGGCUCAAUUGCUGGGCCGCGAAGUGGGUCUGCUCACCUGGCUGAGAUACACCAUCUGG ..........------........((((((.....((((.(.(((((((.....))))))).).))))(((.((((((......)))).)).))))))))) ( -26.40) >DroPse_CAF1 91500 93 - 1 UUUCAUUACU------CU--CCGCGCAGCUAUCCCUUCUAUCUCAGUCAGCUUUUGGGACGCGAGGUGGGCCUUCUGACCUGGCUGCGCUACACCAUCUGG ..........------..--..(((((((((((...((((((((.(((..(....).)))..))))))))......))..)))))))))............ ( -27.00) >DroSec_CAF1 51422 95 - 1 CUACUGAACU------UUACCCCCACAGAUAUCCCUACUACUUGGCUCAAUUGCUGGGCCGCGAGGUGGGCCUGCUCACCUGGCUGAGGUACACCAUCUGG ..........------.........(((((.....((((....((((((.....))))))((.(((((((....))))))).))...))))....))))). ( -31.70) >DroSim_CAF1 52646 95 - 1 CUACUGAACU------UUACCCCCACAGAUAUCCCUACUACUUGGCUCAAUUGCUGGGCCGCGAGGUGGGCCUGCUCACCUGGCUGAGGUACACCAUCUGG ..........------.........(((((.....((((....((((((.....))))))((.(((((((....))))))).))...))))....))))). ( -31.70) >DroAna_CAF1 110101 101 - 1 UUAAUAAAAUAAGUUUCUUCUUCGCCAGCUAUCCUUUCUAUCUAAGUCAGCUACUGGGCCGCGAGGUGGGUCUGCUCACUUGGCUGCGCUACACCAUUUGG ........................((((((...(((.......)))..))))...(.((.((.(((((((....))))))).)).)).)..........)) ( -21.10) >DroPer_CAF1 66233 93 - 1 UUUCAUUACU------CU--CCGCGCAGCUAUCCCUUCUAUCUCAGUCAGCUUUUGGGACGCGAGGUGGGCCUUCUCACCUGGCUGCGCUACACCAUCUGG ..........------..--..((((((((..........((((((.......))))))....(((((((....)))))))))))))))............ ( -29.20) >consensus CUACUGAACU______CUACCCCCACAGAUAUCCCUACUACCUGACUCAACUGCUGGGCCGCGAGGUGGGCCUGCUCACCUGGCUGAGCUACACCAUCUGG .........................(((............((((((......))))))..((.(((((((....))))))).)).............))). (-18.36 = -17.87 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:24 2006