| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,441,748 – 13,441,852 |
| Length | 104 |
| Max. P | 0.994742 |
| Location | 13,441,748 – 13,441,852 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 75.30 |
| Mean single sequence MFE | -27.54 |
| Consensus MFE | -18.50 |
| Energy contribution | -17.74 |
| Covariance contribution | -0.76 |
| Combinations/Pair | 1.34 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.67 |
| SVM decision value | 2.51 |
| SVM RNA-class probability | 0.994742 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13441748 104 + 22407834 AUGUCUCCAGCCAUUUGAGCACACAAAUCAUUGCAAAUGCA--UACGGCGAAUAU----AUAUUCUGUAUAUAUGCG-------GUAUAGUAUUUGCUGAUACUUAGUUGGCC-ACAG- .(((..(((((...(((......)))((((..(((((((((--(((.(((.((((----((.....)))))).))).-------)))).)))))))))))).....)))))..-))).- ( -30.30) >DroSec_CAF1 48628 97 + 1 AUGUCUCCAGCCAUUUGAGCACACAAAUCAUUGCAAAUGCA--UACGGCGAAUAAAU-----------AUAUAUGCG-------GUAUAGUAUUUGCUGAUACCUACUUGGCC-ACAG- .(((..((((((....).))......((((..(((((((((--(((.(((.(((...-----------.))).))).-------)))).)))))))))))).......)))..-))).- ( -24.50) >DroSim_CAF1 49794 109 + 1 AUGUCUCCAGCCAUUUGAGCACACAAAUCAUUGCAAAUGCA--UACGGCGUAUAAAUGUAUAUUCCGCAUAUAUGCG-------GUAUAGUAUUUGCUGAUACCUACUUGGCC-ACAAU .(((..((((((....).))......((((..(((((((((--(((.(((((((..(((.......)))))))))).-------)))).)))))))))))).......)))..-))).. ( -29.40) >DroYak_CAF1 49400 98 + 1 AUGUCCCCAGCCAUUUGAGCACACAAAUCAUUGCAAAUGCA--UACGGUGAAUA------UAUUCCGUAUAUGUGCG-------GCAUAGUAUUUGCUGAUUC----UUGGCC-ACGG- ....((...((((...(((((((.........((....))(--(((((......------....)))))).)))))(-------(((.......))))...))----.)))).-..))- ( -24.30) >DroAna_CAF1 106768 110 + 1 AUGUCUCCAGUCAUUUGGGUACACAAAUCAUGGCACAUAUACACACAUGGAGUAC----GUACUCCCAAUAUACGUAUUUCUAUAUGUAGUGUUUGCUGAUGC----UUGGCUUGCAC- .(((..((((....))))..)))(((..((.((((((((.(((((((((((((((----(((.........))))))))))...)))).)))).)).)).)))----)))..)))...- ( -29.20) >consensus AUGUCUCCAGCCAUUUGAGCACACAAAUCAUUGCAAAUGCA__UACGGCGAAUAA_____UAUUCCGUAUAUAUGCG_______GUAUAGUAUUUGCUGAUAC_UA_UUGGCC_ACAG_ .(((.....((((.(((......)))((((..((((((((.........(((((......)))))......(((((........))))))))))))))))).......))))..))).. (-18.50 = -17.74 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:23 2006