Locus 4676

Sequence ID 2L_DroMel_CAF1
Location 13,436,493 – 13,436,613
Length 120
Max. P 0.749338
window7391

overview

Window 1

Location 13,436,493 – 13,436,613
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.11
Mean single sequence MFE -44.29
Consensus MFE -29.21
Energy contribution -28.47
Covariance contribution -0.74
Combinations/Pair 1.40
Mean z-score -1.87
Structure conservation index 0.66
SVM decision value 0.47
SVM RNA-class probability 0.749338
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13436493 120 + 22407834
AGCAAUUGCAACCGCACUUCUUCGGUUCCAUGACUAAUCUGGAGGAGGUGCGGCUGGCGUCCGCCACAAGUAGUGUGAAUCGCUCGAUGUUCAAGGGCACCAACAAGUUGCAGCUGAUCA
..((.((((((((((((((((((((((........))))..)))))))))))(.(((.((((...(((.(.((((.....)))))..)))....)))).))).)..))))))).)).... ( -41.10)
>DroPse_CAF1 81383 120 + 1
ACGAGCUGCAGCCGCAUCUCUUCAGCUCCAUGAAGCAGCUGGUGGAGGUGCGCUUGUCCCAGGCCACUGGGCAUGUCAACAAGAGCAUGUUCAAGGGCAGCGAAAAGCUGCGGCUGAUCA
...((((((((((((((((((((((((.(.....).)))))).))))))))).((((.....(((..(((((((((........)))))))))..))).))))...)))))))))..... ( -54.60)
>DroSim_CAF1 44573 120 + 1
AGCAAUUGCAGUCGCACUUCUUCGGUUCCAUGACUAAUCUGGAGGAGGUGCGCCUGGCGUCCGCCACAAGUAGUGUGAAUCGCACCAUGUUCAAGGGCACCAACAAGUUGCAGCUGAUCA
.((((((..((.(((((((((((((((........))))..))))))))))).))((.((((.......((.(((((...))))).))......)))).))....))))))......... ( -37.82)
>DroEre_CAF1 47928 120 + 1
AGCAAUUGCAGCCGCACUUUUUCGGUUCCAUGAAAAAUCUGGAGGAGGUGCGACUGGCGUCCGCAACCAGUAGUGUGAAUCGCACCAUGUUUAAGGGCACCAACAAGCUGCAGCUGAUCA
..((.((((((((((((((((((((((........))))..)))))))))))..(((.((((..((.((...(((((...)))))..)).))..)))).)))....))))))).)).... ( -41.40)
>DroYak_CAF1 44270 120 + 1
AGCAAUUGCAACCGCACUUCUUCGGUUCCAUGAAUAAUCUGGAGGAGGUGCGCCUGGCGUCCGCCACAAGUAGUGUGAAUCGCAGCAUGUUCAAGGGCACCAACAAGUUGGCGCUGAUCA
(((...(((...(((((((((((((((........))))..)))))))))))((((((....)))(((.((.(((.....))).)).)))...))))))((((....)))).)))..... ( -37.30)
>DroPer_CAF1 55969 120 + 1
ACGAGUUGCAGCCGCAUCUCUUCAGCUCCAUGAAGCAGCUGGUGGAGGUGCGCUUGUCCCAGGCCACUGGGCAUGUCAACAAGAGCAUGUUCAAGGGCAGCGAAAAGCUGCGGCUGAUCA
..((....(((((((((((((((((((.(.....).)))))).)))))))).((((.(((((....)))))(((((........)))))..)))).(((((.....)))))))))).)). ( -53.50)
>consensus
AGCAAUUGCAGCCGCACUUCUUCGGUUCCAUGAAUAAUCUGGAGGAGGUGCGCCUGGCGUCCGCCACAAGUAGUGUGAAUCGCACCAUGUUCAAGGGCACCAACAAGCUGCAGCUGAUCA
.....((((((((((((((((((((.............)))).)))))))))..(((.((((..(((.....)))(((((........))))).)))).)))....)))))))....... (-29.21 = -28.47 +  -0.74)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:19 2006