Locus 4673

Sequence ID 2L_DroMel_CAF1
Location 13,427,647 – 13,427,738
Length 91
Max. P 0.843192
window7386

overview

Window 6

Location 13,427,647 – 13,427,738
Length 91
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 87.74
Mean single sequence MFE -41.03
Consensus MFE -32.09
Energy contribution -34.20
Covariance contribution 2.11
Combinations/Pair 1.04
Mean z-score -3.05
Structure conservation index 0.78
SVM decision value 0.76
SVM RNA-class probability 0.843192
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13427647 91 + 22407834
UCGUCGGGUGCCAAGUG-GUGCCGAAUCCGGUCGAGUCCUGGCGUAUCCUGGCGAAAGCCAUAAGUGGUUGCGCCUCAUUUGGCAGCCCAUG
.....((((((((((((-(.((((....))))........((((((.((((((....)))).....)).)))))))))))))))).)))... ( -43.90)
>DroSec_CAF1 34890 91 + 1
UCGUCGGGUGCCAAGUG-GUGCCGAAUCCGGUCGAGUCCUGGCGUAUCCUGGCGAAAGCCAUACGUGGUUGCGCCUCAUUUGGCAGCCCAUG
.....((((((((((((-(.((((....))))........((((((.((((((....)))).....)).)))))))))))))))).)))... ( -43.90)
>DroSim_CAF1 35749 91 + 1
UCGUCGGGUGCCAAGUG-GUGCCGAAUCCGGUCGAGUCCUGGCGUAUCCUGGCGAAAGCCAUAAGUGGUUGCGCCUCAUUUGGCAGCCCAUG
.....((((((((((((-(.((((....))))........((((((.((((((....)))).....)).)))))))))))))))).)))... ( -43.90)
>DroEre_CAF1 39094 91 + 1
UCGUCGGGUGCCAAGUG-GUGCCGAGUCCGGUCGAGUCCUGGCGUAUCCUGGCAAAAGCCAUAAGUGGUUGCGCCUCAUUUGGCAGUCCGUG
....(((((((((((((-(.((((....))))........((((((.((((((....)))).....)).)))))))))))))))).)))).. ( -38.70)
>DroYak_CAF1 35445 91 + 1
UCGUCGGGUGCCAAGUG-GUGCCGAAUCCGGUCGAGUCCUGGCGUAUCCUGGCGAAAGCCAUAAGUGGUUGCGCCCCAUUUGGCAGCCCAUG
.....((((((((((((-(.((((....))))........((((((.((((((....)))).....)).)))))))))))))))).)))... ( -46.00)
>DroAna_CAF1 92627 72 + 1
UCAGCGAGUGGAAAGUGAGUGCCGAAUCCG--------------------GGCGAAAGCCAUAAGUGGUUGCGCCUCAUUUGGCACUCCAUG
..............(.(((((((((((..(--------------------((((..(((((....))))).))))).))))))))))))... ( -29.80)
>consensus
UCGUCGGGUGCCAAGUG_GUGCCGAAUCCGGUCGAGUCCUGGCGUAUCCUGGCGAAAGCCAUAAGUGGUUGCGCCUCAUUUGGCAGCCCAUG
.....((((((((((((...((((....))))........((((((.((((((....)))).....)).)))))).))))))))).)))... (-32.09 = -34.20 +   2.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:14 2006